Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a025544m |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42290 Isoelectric Point: 8.5873 |
Chromosome | Chromosome/Scaffold: 112 Start: 111964 End: 114338 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 382 | 0 |
WNTACTTTQPATIYVPPGRFLVRSVTFSGKLCKNTAITIRIDGTIVAPSNYNVIGNSGNWLKFERVTGVSILGGTLDGQGSKLWACKNSGKICPKGATSL AFYNSNNIIIDSVSSLNSQMFHILIEGCKNANLINMKISAPGNSPNTDGIHVQQSSTVTISNSRIGTGDDCVSIGPGSSNLWIENLSCGPGHGISIGSLG WDLQEAGVQNVTVKLATFTGTQNGVRVKTWARPSNGFVRDILFQHIVILNSQNPIIIDQNYCPDHHNCPTQGSGVKISNIKYEDVHGISASQVAIKFDCS KTNPCSGIMLDGVDLTFKNKSAIASCANAG |
Full Sequence |
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Protein Sequence Length: 396 Download |
MYHSQIIQIL IFTFFFFYYY SFAANNNPSY NVQNFGAKPN GKSDSTKAFL SAWNTACTTT 60 QPATIYVPPG RFLVRSVTFS GKLCKNTAIT IRIDGTIVAP SNYNVIGNSG NWLKFERVTG 120 VSILGGTLDG QGSKLWACKN SGKICPKGAT SLAFYNSNNI IIDSVSSLNS QMFHILIEGC 180 KNANLINMKI SAPGNSPNTD GIHVQQSSTV TISNSRIGTG DDCVSIGPGS SNLWIENLSC 240 GPGHGISIGS LGWDLQEAGV QNVTVKLATF TGTQNGVRVK TWARPSNGFV RDILFQHIVI 300 LNSQNPIIID QNYCPDHHNC PTQGSGVKIS NIKYEDVHGI SASQVAIKFD CSKTNPCSGI 360 MLDGVDLTFK NKSAIASCAN AGGTAFGVVL PTNCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-80 | 57 | 381 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-87 | 32 | 395 | 372 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-90 | 32 | 391 | 367 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-97 | 32 | 394 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-128 | 32 | 395 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA80489.1 | 0 | 14 | 395 | 7 | 389 | polygalacturonase precursor [Solanum lycopersicum] |
GenBank | AAC28905.1 | 0 | 27 | 395 | 19 | 387 | polygalacturonase 4 [Solanum lycopersicum] |
GenBank | AAC28906.1 | 0 | 27 | 395 | 19 | 387 | polygalacturonase 5 [Solanum lycopersicum] |
GenBank | AAC70951.1 | 0 | 27 | 395 | 27 | 395 | polygalacturonase 7 [Solanum lycopersicum] |
GenBank | ACA49228.1 | 0 | 42 | 395 | 1 | 354 | putative polygalacturonase [Olea europaea] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-18 | 76 | 337 | 50 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 2e-16 | 118 | 339 | 76 | 293 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 2e-16 | 118 | 339 | 76 | 293 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 2e-16 | 118 | 339 | 76 | 293 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.000000000000003 | 31 | 386 | 22 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |