Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_003_00665.1 |
Family | GH28 |
Protein Properties | Length: 460 Molecular Weight: 49581.2 Isoelectric Point: 7.5511 |
Chromosome | Chromosome/Scaffold: 3 Start: 8438606 End: 8440641 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 104 | 439 | 0 |
AWSDVCDWDGQPTLLIPEGTFFVNPVTFQGPCYNTYPLIVEIAGTLKAPSDIHAFEEPSWIVIRKLNNFILTGNGTGIIDGQGKESWTRPRCRGKKRCKE YPHSIRFQKVSNATISNISLLNSKCFHISFLDSSNILMRGINITAPGNSRNTDGIHLSRSSDINITSSRIGVGDDCVSIGAGNTNIGIFGVYCGPGHGIS VGSLGKYNNEEDVAGIIVNNCTINGTTNGLRIKTWPGPQAIKVYDITFENIKMINVSNPIIIDQKYCPGHRCDSDISSVGLSDIQFRNIKGTSQTASPVS IFCSPKVPCKNIHLRDINLTYANGSTSAESSCFNTE |
Full Sequence |
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Protein Sequence Length: 460 Download |
MVAFMRTVIT FLFICLTLET TYCSRFAPAP SPKPESVSPA GAPGPHSESP HPSKAAPFSA 60 PGPISESSEP SIAVPESMRR IFDVTQYGAV SDGKSDSQLA FLTAWSDVCD WDGQPTLLIP 120 EGTFFVNPVT FQGPCYNTYP LIVEIAGTLK APSDIHAFEE PSWIVIRKLN NFILTGNGTG 180 IIDGQGKESW TRPRCRGKKR CKEYPHSIRF QKVSNATISN ISLLNSKCFH ISFLDSSNIL 240 MRGINITAPG NSRNTDGIHL SRSSDINITS SRIGVGDDCV SIGAGNTNIG IFGVYCGPGH 300 GISVGSLGKY NNEEDVAGII VNNCTINGTT NGLRIKTWPG PQAIKVYDIT FENIKMINVS 360 NPIIIDQKYC PGHRCDSDIS SVGLSDIQFR NIKGTSQTAS PVSIFCSPKV PCKNIHLRDI 420 NLTYANGSTS AESSCFNTEG AYLDMKNPIP CVKSTSLTY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-82 | 84 | 422 | 342 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-86 | 81 | 452 | 375 | + polygalacturonase | ||
PLN02793 | PLN02793 | 5.0e-92 | 79 | 455 | 384 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-97 | 116 | 451 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-129 | 81 | 451 | 374 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 65 | 446 | 475 | 857 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 81 | 442 | 55 | 417 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 53 | 446 | 10 | 399 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 81 | 446 | 70 | 438 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 81 | 451 | 55 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-27 | 178 | 423 | 115 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-16 | 181 | 406 | 79 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-16 | 181 | 406 | 79 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-16 | 181 | 406 | 79 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-16 | 181 | 406 | 79 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |