Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g063430.1 |
Family | GH28 |
Protein Properties | Length: 316 Molecular Weight: 34897.7 Isoelectric Point: 7.0887 |
Chromosome | Chromosome/Scaffold: 5 Start: 25588397 End: 25591155 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 308 | 0 |
WSDACKWKGKSTILIPNGTYTLRGPCNSSINFRLEGLLKAPIDPKSFASDNWINFKYVNKLMVGGGGSLDAQGAYAWKMNDCQKNPNCRPLPTSMKFDYI TNGYIHHMHSFNSKQSHFGLYRCNNMTLTKLQIKAPGDSPNTDGIKIGKSTGINITSVNIRTGNDCISMLSGLKNVQIMDVYCGPGHGINIGSLGKYEDE EDLADIIVKNCTFNGTSNGVRIKSYESQLNKTVVASNFIYEDIVMENVEYHIVIDQHYCSN |
Full Sequence |
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Protein Sequence Length: 316 Download |
MGENVLFLLI LLVCIVETEA QYKIFNVITY NASSNGNTDN SEAFLKAWSD ACKWKGKSTI 60 LIPNGTYTLR GPCNSSINFR LEGLLKAPID PKSFASDNWI NFKYVNKLMV GGGGSLDAQG 120 AYAWKMNDCQ KNPNCRPLPT SMKFDYITNG YIHHMHSFNS KQSHFGLYRC NNMTLTKLQI 180 KAPGDSPNTD GIKIGKSTGI NITSVNIRTG NDCISMLSGL KNVQIMDVYC GPGHGINIGS 240 LGKYEDEEDL ADIIVKNCTF NGTSNGVRIK SYESQLNKTV VASNFIYEDI VMENVEYHIV 300 IDQHYCSNSG ECNLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-62 | 26 | 309 | 295 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-66 | 23 | 312 | 301 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-67 | 24 | 312 | 296 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-72 | 52 | 313 | 267 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-91 | 24 | 306 | 289 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 23 | 308 | 33 | 322 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 23 | 308 | 33 | 322 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 5 | 306 | 11 | 317 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179148.1 | 0 | 5 | 306 | 11 | 317 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 5 | 314 | 10 | 326 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000007 | 112 | 310 | 115 | 319 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.00000000000006 | 60 | 305 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000006 | 60 | 305 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000006 | 60 | 305 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000000006 | 60 | 305 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |