Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G006700.1 |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41590.4 Isoelectric Point: 9.5993 |
Chromosome | Chromosome/Scaffold: 17 Start: 462290 End: 464038 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 377 | 0 |
WSAACGSASPSTINVPKGRYLLKATVFRGPCKNKITVQIDGTLVAPTDYRALGNSGYWILFIKVNRVSVFGGTLDAKGAGFWACRKSGQNCPVGARSITF NWANDILISGLTSINSQSMHLVINSCNNVLVRNVRVIAPDQSPNTDGIHVQTSTGVTITGSTLQTGDDCISIGPSTRNMLMSSIKCGPGHGISIGSLGKD FNEGGVENITLTNSIFSGSDNGVRIKSWARPSNGFVRNVVFQNLIMKNVRNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIQGTSASPEAVTFDCSSS NPCRGIKLQDIKLTYMNTAATSSCKNIG |
Full Sequence |
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Protein Sequence Length: 391 Download |
MAKFVVSYVV LFLFCTFQQS NAASASYNVI KFGAKPDGKT DSTQPFLKAW SAACGSASPS 60 TINVPKGRYL LKATVFRGPC KNKITVQIDG TLVAPTDYRA LGNSGYWILF IKVNRVSVFG 120 GTLDAKGAGF WACRKSGQNC PVGARSITFN WANDILISGL TSINSQSMHL VINSCNNVLV 180 RNVRVIAPDQ SPNTDGIHVQ TSTGVTITGS TLQTGDDCIS IGPSTRNMLM SSIKCGPGHG 240 ISIGSLGKDF NEGGVENITL TNSIFSGSDN GVRIKSWARP SNGFVRNVVF QNLIMKNVRN 300 PIIVDQNYCP NNQGCPRQSS GVKISQVTYR NIQGTSASPE AVTFDCSSSN PCRGIKLQDI 360 KLTYMNTAAT SSCKNIGGTS SGVLMPESCI * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-93 | 54 | 376 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-93 | 10 | 387 | 385 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-100 | 29 | 389 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-104 | 22 | 389 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 0 | 1 | 390 | 392 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 3 | 390 | 4 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 6 | 390 | 5 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 120 | 363 | 124 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-18 | 111 | 376 | 70 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-18 | 111 | 376 | 70 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-18 | 111 | 376 | 70 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-18 | 111 | 376 | 70 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |