Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a023860m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 41917.6 Isoelectric Point: 8.8191 |
Chromosome | Chromosome/Scaffold: 2 Start: 3757880 End: 3759724 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 383 | 0 |
WSAACASNKPTTIYVPRGRFLLRNVHFRGPCRNKAITVRIDGTLVAPANFNAIGKSGNWLLFEGADGVSVRGGTLDAQGPALWECKKSRGKDCPSGATTL GMTKSKNMEIIGLTSLNSQMFHIVINGCENVKLQGVRVSASGNSPNTDGIHVQLSTGVTILSTKISTGDDCVSIGPGTKNLWIENVTCGPGHGISIGSLG KDYEEAGVENVTVRSVNFKNTQNGLRIKTWGRPSKGFVRGVVFQHALMTNVQNPIVIDQNYCPNNNNCPGQVSGVKISDVSYEDIQGTSATEVAVKFDCS KANPCERIRLENVKLSYKNRRAEASCSNAAGSV |
Full Sequence |
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Protein Sequence Length: 395 Download |
MGNLTAFILF LYFFSLHQSL AAAAATTYNV LDLGAKPDGA TDSTAALSRA WSAACASNKP 60 TTIYVPRGRF LLRNVHFRGP CRNKAITVRI DGTLVAPANF NAIGKSGNWL LFEGADGVSV 120 RGGTLDAQGP ALWECKKSRG KDCPSGATTL GMTKSKNMEI IGLTSLNSQM FHIVINGCEN 180 VKLQGVRVSA SGNSPNTDGI HVQLSTGVTI LSTKISTGDD CVSIGPGTKN LWIENVTCGP 240 GHGISIGSLG KDYEEAGVEN VTVRSVNFKN TQNGLRIKTW GRPSKGFVRG VVFQHALMTN 300 VQNPIVIDQN YCPNNNNCPG QVSGVKISDV SYEDIQGTSA TEVAVKFDCS KANPCERIRL 360 ENVKLSYKNR RAEASCSNAA GSVSGLIEPT SCLY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 9.0e-86 | 24 | 389 | 372 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-92 | 59 | 379 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-92 | 30 | 393 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-95 | 7 | 392 | 400 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 8.0e-132 | 20 | 393 | 375 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 393 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 1 | 393 | 1 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABC72325.1 | 0 | 1 | 393 | 1 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABV32553.1 | 0 | 7 | 393 | 8 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002529090.1 | 0 | 10 | 393 | 11 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-24 | 123 | 366 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-17 | 122 | 378 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-17 | 122 | 378 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-17 | 122 | 378 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-17 | 122 | 378 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |