Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G006400.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42103.9 Isoelectric Point: 9.7516 |
Chromosome | Chromosome/Scaffold: 17 Start: 426157 End: 427562 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 380 | 0 |
LACSSTWPAMVYVPKGSFLIKPVVFGGPCKNKILFSIDGTIVAPSNYWVFGNSGFWILFYKVTGVTVYGGTIDAKGGSFWACRNAGKNCPPGARSMSFVA SSNIMVSRLTSINSQMFHISIDQCHNITLENMKISAPSWSPNTDGIHMQSSTGISITNSMIKTGDDCISIGPGSKNLRIHRIVCGPGHGISIGSLALHQN EDGVENVKVTSVVFMGTQNGVRIKSWGRPSTGYARNIVFENIIMKYVYNPIIIDQNYCPSAKGCPKHSSGVKISGVTYKNIKGTSATQLAMNFVCSSSNP CKGLILEDINLTYYKKSGAATSFCKNANGS |
Full Sequence |
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Protein Sequence Length: 392 Download |
MVKIILVYCV LFLLFAASYQ ASNVVYNVVK LGAKPDGKID STEAFKKAWT LACSSTWPAM 60 VYVPKGSFLI KPVVFGGPCK NKILFSIDGT IVAPSNYWVF GNSGFWILFY KVTGVTVYGG 120 TIDAKGGSFW ACRNAGKNCP PGARSMSFVA SSNIMVSRLT SINSQMFHIS IDQCHNITLE 180 NMKISAPSWS PNTDGIHMQS STGISITNSM IKTGDDCISI GPGSKNLRIH RIVCGPGHGI 240 SIGSLALHQN EDGVENVKVT SVVFMGTQNG VRIKSWGRPS TGYARNIVFE NIIMKYVYNP 300 IIIDQNYCPS AKGCPKHSSG VKISGVTYKN IKGTSATQLA MNFVCSSSNP CKGLILEDIN 360 LTYYKKSGAA TSFCKNANGS KKGVVIPPSC L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-93 | 53 | 390 | 342 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-94 | 17 | 387 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-106 | 4 | 391 | 410 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-114 | 4 | 390 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-162 | 1 | 391 | 393 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 391 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331632.1 | 0 | 1 | 391 | 1 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 391 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 5 | 391 | 4 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 5 | 391 | 4 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-21 | 93 | 307 | 85 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-17 | 14 | 380 | 9 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 1e-16 | 119 | 367 | 77 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-16 | 119 | 367 | 77 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-16 | 119 | 367 | 77 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |