Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00024916m |
Family | GH27 |
Protein Properties | Length: 308 Molecular Weight: 34088.7 Isoelectric Point: 6.3571 |
Chromosome | Chromosome/Scaffold: 035761 Start: 3338 End: 6864 |
Description | Melibiase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH27 | 126 | 212 | 3.1e-27 |
SMTDIADKNNKWASYAGPGGWNDPDMLEVGNGGMTFAEYRSHFSIWALMKAPLLIGCDVRNMTSETMKILSNKEVIQVNQDPLGVQG | |||
GH27 | 34 | 135 | 5e-35 |
FTCQVRPGSLYHENDDAALFASWGVDYLKYDNCYNLGIKPQKRYPPMRDALNSTGRQIFYSLCEWGQDDPALWAGKVGNSWRTTDDITDTWKSMTDIADK NN |
Full Sequence |
---|
Protein Sequence Length: 308 Download |
MLKLNYFINS IKALADYVHG KGLKLGIYSD AGIFTCQVRP GSLYHENDDA ALFASWGVDY 60 LKYDNCYNLG IKPQKRYPPM RDALNSTGRQ IFYSLCEWGQ DDPALWAGKV GNSWRTTDDI 120 TDTWKSMTDI ADKNNKWASY AGPGGWNDPD MLEVGNGGMT FAEYRSHFSI WALMKAPLLI 180 GCDVRNMTSE TMKILSNKEV IQVNQDPLGV QGRKILGEGK NGCREVWAGS LSGNRLAVAL 240 WNRCSEIANI TMKLPAVGLD ESAAYSVRDL WKHESLSENV VGTFGAQVDV HDTKMYIFSP 300 AISVASI* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02899 | PLN02899 | 4.0e-16 | 14 | 204 | 261 | + alpha-galactosidase | ||
PLN03231 | PLN03231 | 1.0e-17 | 42 | 209 | 191 | + putative alpha-galactosidase; Provisional | ||
PLN02692 | PLN02692 | 5.0e-131 | 3 | 300 | 299 | + alpha-galactosidase | ||
PLN02808 | PLN02808 | 1.0e-151 | 3 | 300 | 299 | + alpha-galactosidase | ||
PLN02229 | PLN02229 | 0 | 7 | 307 | 301 | + alpha-galactosidase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ41098.1 | 0 | 7 | 306 | 101 | 436 | hypothetical protein OsJ_25590 [Oryza sativa Japonica Group] |
GenBank | EEC82687.1 | 0 | 7 | 306 | 127 | 426 | hypothetical protein OsI_27343 [Oryza sativa Indica Group] |
RefSeq | NP_001060639.1 | 0 | 7 | 306 | 125 | 424 | Os07g0679300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130661.1 | 0 | 7 | 307 | 125 | 425 | hypothetical protein LOC100191764 [Zea mays] |
RefSeq | XP_002461216.1 | 0 | 7 | 307 | 131 | 431 | hypothetical protein SORBIDRAFT_02g042960 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1uas_A | 0 | 7 | 300 | 72 | 361 | A Chain A, Crystal Structure Of Rice Alpha-Galactosidase |
PDB | 1ktc_A | 0 | 7 | 300 | 82 | 386 | A Chain A, Crystal Structure Of Rice Alpha-Galactosidase |
PDB | 1ktb_A | 0 | 7 | 300 | 82 | 386 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
PDB | 3a5v_A | 0 | 7 | 298 | 72 | 390 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
PDB | 3lrl_A | 0 | 7 | 274 | 92 | 400 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
melibiose degradation | ALPHAGALACTOSID-RXN | EC-3.2.1.22 | α-galactosidase |
stachyose degradation | RXN-11501 | EC-3.2.1.22 | α-galactosidase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JG968131 | 243 | 66 | 308 | 0 |
GT042694 | 265 | 44 | 308 | 0 |
GT793496 | 251 | 7 | 257 | 0 |
JK578897 | 238 | 33 | 270 | 0 |
JG947911 | 251 | 7 | 257 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|