| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 28838.m000254 |
| Family | GT5 |
| Protein Properties | Length: 754 Molecular Weight: 83916.7 Isoelectric Point: 5.8747 |
| Chromosome | Chromosome/Scaffold: 28838 Start: 77954 End: 84069 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 264 | 747 | 0 |
| NVILVSAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGNYAETQDIGVRKRYKVDGQDFEVTYFQAFIDGVDFVFIECPMFRHIESNIYGGNRV DILKRMVLFCKAAIEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLRAYYRDNGLMQFTRSVLVIHNIAHQGRGPMDDFVYTDLPEHYIDLFKLYDPV GGDHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHNIINENDWKFSGIVNGIDTKEWNPLCDVHLTSDGYTHYSLETLDTGKSQCKAALQKELGLP VRPDVPLIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLVMLGTGRPDLEQLLRQFESQHSDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAM TYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFDSAEANKLIHALGNCLLSYREYKKSWEGLQRRGMMQDLSWDHAAEKYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 754 Download |
| MASLGSLPFI VEPKTESSIL FHGKSQQRSS KFPSFAYRPN ISYSFAISND GFPLRLKSVR 60 ATGKDGVNSD GSEDAIQTTI EKSKKVLAMQ KDLLQQIAER RKLVSDIKSS IIDQELDSTS 120 YDQTESSLPN PNNGSTSVNI LEQQIGSISP SSYVSSAADV RPENTSSAFS EGHSIDERDP 180 KQHESPKTVS SIKNSTRQLN QVSSEKAWSD ELPTFLSNRE TSMLNDGMTE SSTESTLHKV 240 DNVENIPMTE DTKSPPLAGA NVMNVILVSA ECAPWSKTGG LGDVAGSLPK ALARRGHRVM 300 VVAPRYGNYA ETQDIGVRKR YKVDGQDFEV TYFQAFIDGV DFVFIECPMF RHIESNIYGG 360 NRVDILKRMV LFCKAAIEVP WHVPCGGICY GDGNLVFIAN DWHTALLPVY LRAYYRDNGL 420 MQFTRSVLVI HNIAHQGRGP MDDFVYTDLP EHYIDLFKLY DPVGGDHFNI FAAGLKTADR 480 VVTVSHGYAW ELKTSEGGWG LHNIINENDW KFSGIVNGID TKEWNPLCDV HLTSDGYTHY 540 SLETLDTGKS QCKAALQKEL GLPVRPDVPL IGFIGRLDHQ KGVDLIAEAI PWMMGQDVQL 600 VMLGTGRPDL EQLLRQFESQ HSDKVRGWVG FSVKTAHRIT AGADILLMPS RFEPCGLNQL 660 YAMTYGTIPV VHAVGGLRDT VQPFDPFNES GLGWTFDSAE ANKLIHALGN CLLSYREYKK 720 SWEGLQRRGM MQDLSWDHAA EKYEEVLVAA KYQW |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 7.0e-87 | 263 | 751 | 520 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-134 | 263 | 745 | 491 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 8.0e-174 | 263 | 746 | 496 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 263 | 750 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 264 | 747 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF13168.1 | 0 | 1 | 754 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
| GenBank | ABV25894.1 | 0 | 1 | 754 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
| RefSeq | XP_002278470.1 | 0 | 1 | 754 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| RefSeq | XP_002324061.1 | 0 | 1 | 754 | 1 | 742 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531856.1 | 0 | 1 | 754 | 1 | 754 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 263 | 748 | 10 | 509 | A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic Transglycosylase Slt35 From Escherichia Coli |
| PDB | 3vue_A | 0 | 263 | 748 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 263 | 746 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 263 | 753 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 263 | 753 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO777841 | 311 | 444 | 754 | 0 |
| HO777841 | 398 | 59 | 444 | 0 |
| HO781048 | 392 | 363 | 754 | 0 |
| HO445868 | 437 | 318 | 754 | 0 |
| HO781048 | 41 | 322 | 362 | 0.079 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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