| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10042837 |
| Family | GT5 |
| Protein Properties | Length: 1227 Molecular Weight: 138621 Isoelectric Point: 5.2637 |
| Chromosome | Chromosome/Scaffold: 67 Start: 2316645 End: 2322714 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 554 | 1041 | 0 |
| HVIHIAAEMAPVAKVGGLGDVVSGLGKALQKRGHLVEIIIPKYDCMEYDRVYDLKALDKVVESYYDGKLYRNKIWVGIVEGLPVYFIEPLHPGKFFWRGQ FYGEQDDFKRFSYFSRAALELVFQAGKRPDIIHCHDWQTAFVAPLYWDIYTPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNFAH DRVNSVKGAVVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILNGIDGDAWNPSSDSLLSVQYSANDLGGKAENKSAIRRHLGLSTDNVRRP LVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPISHIQQEFEGIANQFRNNENARLILKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYG AVPIVRKTGGLNDSVFDVDDETIDVKFRNGFTFVNPTADGLNSALERAFKHYMKEEEEEEGWEELVRKIMKMDFSWETSAAKYEDLYS | |||
| Full Sequence |
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| Protein Sequence Length: 1227 Download |
| MAITKQPSSC FIGQAFAGFS YGNSRNVRLW PPLHHQMLLP ASCKMSHRNL RYRKRQVNKI 60 STELPTPAVE TLSDDESEKA LSSNKVHNPP NHEILPFLEA TASIVQQHNA GVEDTDTGEE 120 SEDRVNGEEP FDSKVEAEHF QDVDFAYLDG TTVSEEALSL ALDPIGNGEN RLSSVQMEDL 180 IGMTRSAEQN IFLLNDAEFS ALENTDIILS EKQSLQREIN GLETRLAETN ARLKVAAQEK 240 VYVDLLGNQL QKLRNELTHR SPAVGDVLHQ PENPNKEADI LQNYAIEALS EDMDSLRTEN 300 MFLKQDLEAL KAQLAAVKDT DLRVVTLEKE RSTLESSLKD LESKLSTSQE DVSKLSSLRV 360 EYEDLSGRVE SLQTLLNKAT GQADQAILVL QQNQELRKKV DKLEECLEEA NIYKLSSEKL 420 QQYNELMQQK IKLLEDHLMR SDEEIHSYVQ LYQESVEEFQ DTLNNLIEER KKRALDKPVD 480 DMPWELWSRL VLKVDGWLLE GKISTDDAKL LRDLVWKRDR KIYDAYMQCR KNDEFDTIST 540 FLKLISSPKS PGLHVIHIAA EMAPVAKVGG LGDVVSGLGK ALQKRGHLVE IIIPKYDCME 600 YDRVYDLKAL DKVVESYYDG KLYRNKIWVG IVEGLPVYFI EPLHPGKFFW RGQFYGEQDD 660 FKRFSYFSRA ALELVFQAGK RPDIIHCHDW QTAFVAPLYW DIYTPKGLNS ARICFTCHNF 720 EYQGTAPASE LASCGLDVHQ LNRPDRMQDN FAHDRVNSVK GAVVFSNIVT TVSPTYAQEV 780 RTAEGGKGLH STLNFHSKKF IGILNGIDGD AWNPSSDSLL SVQYSANDLG GKAENKSAIR 840 RHLGLSTDNV RRPLVGCITR LVPQKGVHLI RHAIYRTLEL GGQFVLLGSS PISHIQQEFE 900 GIANQFRNNE NARLILKYDE ALSHSIYAAS DMFIIPSIFE PCGLTQMIAM RYGAVPIVRK 960 TGGLNDSVFD VDDETIDVKF RNGFTFVNPT ADGLNSALER AFKHYMKEEE EEEGWEELVR 1020 KIMKMDFSWE TSAAKYEDLY STSVAKAKAA VEILSGGITE SWQRFILVTG TEFSLQLFSR 1080 PDRRGRKRFG EVEHGVHPCH RSPAFGADAS EIHKDTTEEQ GVGNDIRLLF PGVRSQFLVP 1140 EGEDKMVFVG FYQLDIEMPM TVPESPATSY YHRVFHHLAS DAFADREKRA IGGGARWLEL 1200 DLGFFLANAP VFGLGKQVVH LHFLEV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 4.0e-134 | 549 | 1040 | 499 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 4 | 1050 | 1049 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 553 | 1041 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 554 | 1040 | 492 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 553 | 1046 | 496 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16796.1 | 0 | 314 | 1050 | 303 | 1067 | starch synthase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_193558.3 | 0.00008 | 4 | 211 | 3 | 219 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_193558.3 | 0 | 314 | 1049 | 303 | 1035 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002274716.1 | 0 | 8 | 1050 | 6 | 1008 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298514.1 | 0 | 152 | 1051 | 9 | 885 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzv_B | 0 | 553 | 1047 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 553 | 1047 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 553 | 1047 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 1rzu_A | 0 | 553 | 1047 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3d1j_A | 0 | 553 | 1040 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GW865616 | 298 | 659 | 956 | 0 |
| GO851132 | 333 | 628 | 960 | 0 |
| CF828776 | 286 | 678 | 963 | 0 |
| EL448877 | 316 | 481 | 796 | 0 |
| CB893818 | 281 | 552 | 832 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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