Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G348800.1 |
Family | GT5 |
Protein Properties | Length: 311 Molecular Weight: 35209.1 Isoelectric Point: 5.7565 |
Chromosome | Chromosome/Scaffold: 09 Start: 43693437 End: 43694549 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 4 | 303 | 0 |
NLPEHYMDLFKLYDLIGGDHFNIFVAGLKTADRVVTVSHGYSWELKTAEGGWGLHRIINENDWKLRGIVNGIDTKEWNSQYDIHLKSDGYTNYSLETLQT GKPKCKAALQKELGLPVHEDVPLLGFIGRLDQQKGVDLITEAIPWMIGQDVQLVMLGTGRPDLEQMLRQFENEHHDKVRGWVGFSVKTAHRITAGADILL MPSRFEPCCLNQLYAMNYGTIPVVHAVGGLRDTVQQFNLFEESGVGWTFDSADASKLIHALGNCLLTYQQYKTSWEGLQIRGMKQDLSWDNAAEKYEEVL |
Full Sequence |
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Protein Sequence Length: 311 Download |
MYVNLPEHYM DLFKLYDLIG GDHFNIFVAG LKTADRVVTV SHGYSWELKT AEGGWGLHRI 60 INENDWKLRG IVNGIDTKEW NSQYDIHLKS DGYTNYSLET LQTGKPKCKA ALQKELGLPV 120 HEDVPLLGFI GRLDQQKGVD LITEAIPWMI GQDVQLVMLG TGRPDLEQML RQFENEHHDK 180 VRGWVGFSVK TAHRITAGAD ILLMPSRFEP CCLNQLYAMN YGTIPVVHAV GGLRDTVQQF 240 NLFEESGVGW TFDSADASKL IHALGNCLLT YQQYKTSWEG LQIRGMKQDL SWDNAAEKYE 300 EVLVAAKYQW * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 6.0e-69 | 29 | 307 | 285 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 3.0e-95 | 10 | 301 | 294 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 1.0e-113 | 29 | 302 | 274 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-130 | 11 | 303 | 293 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 4.0e-140 | 3 | 306 | 304 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25894.1 | 0 | 2 | 310 | 443 | 751 | starch synthase isoform II [Manihot esculenta] |
GenBank | ACL98480.1 | 0 | 2 | 310 | 466 | 774 | starch synthase IIa-2 precursor [Glycine max] |
GenBank | ACL98481.1 | 0 | 3 | 310 | 485 | 792 | starch synthase IIa precursor [Lotus japonicus] |
RefSeq | XP_002278470.1 | 0 | 2 | 310 | 464 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002531856.1 | 0 | 1 | 310 | 445 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 3 | 304 | 207 | 509 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3vue_A | 0 | 3 | 304 | 207 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 11 | 302 | 182 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 11 | 302 | 182 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 11 | 302 | 182 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW238987 | 276 | 36 | 311 | 0 |
DW238984 | 270 | 35 | 304 | 0 |
HO795490 | 311 | 1 | 311 | 0 |
DN757748 | 263 | 34 | 296 | 0 |
HO781048 | 310 | 2 | 311 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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