Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.012G002300.1 |
Family | GT5 |
Protein Properties | Length: 648 Molecular Weight: 72071.9 Isoelectric Point: 6.4197 |
Chromosome | Chromosome/Scaffold: 12 Start: 246780 End: 253993 |
Description | Glycogen/starch synthases, ADP-glucose type |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 138 | 637 | 0 |
NIVFVTAEAAPYSKTGGLGDVCGSLPIELASRGHRVMVVSPRYLNGTSADENFAHVFDANRRIKLQCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNP YGDSHGAFGDNQFRYTLLCHAACEAPLVLPLGGYTYGEKCLFLVNDWHAGLVSVLLAAKYRPFGVYKDARSVLVIHNLAHQGVEPAATFKNLGLPSNWYG ALEWVFPTWARTHALDTGEAVNILKGAIVTSDRILTVSKGYAWEITTVEGGYGLNQLLSSRRSVLTGITNGIHIAEWDPSSDEHIAFHYSAASLSGKVQC KTALQQELGFPIKPGCPLIGFIGRLDYQKGIDLIHWAIPELMEDDLQFVMLGSGDPLYEDWMRSAENTYRDKFRGWVGFSVPISHRITAGCDILLMPSRF EPCGLNQLYAMRYGTVPVVHATGGLRDTVENFNPYAGEGRGEGTGWTFSPLTKDCMLNALKTAIRTYRDHKSTWEGLMRRCMQKDFTWENAAIQYEQVFE |
Full Sequence |
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Protein Sequence Length: 648 Download |
MASIQLTRML WSCKLSTNIA LSSRKCCSFR RTRQLDFGPL LKRNIQNRKL TAIRSEKSGN 60 EGSISSAIEG EENSDVISSP EKPGLMLGID RDDSGSVIGL NLIPGDNEAI DAEVVSTVTK 120 VKDEEIKKEK IETRVTYNIV FVTAEAAPYS KTGGLGDVCG SLPIELASRG HRVMVVSPRY 180 LNGTSADENF AHVFDANRRI KLQCFGGEQE IAFFHEYREG VDWVFVDHPS YHRPGNPYGD 240 SHGAFGDNQF RYTLLCHAAC EAPLVLPLGG YTYGEKCLFL VNDWHAGLVS VLLAAKYRPF 300 GVYKDARSVL VIHNLAHQGV EPAATFKNLG LPSNWYGALE WVFPTWARTH ALDTGEAVNI 360 LKGAIVTSDR ILTVSKGYAW EITTVEGGYG LNQLLSSRRS VLTGITNGIH IAEWDPSSDE 420 HIAFHYSAAS LSGKVQCKTA LQQELGFPIK PGCPLIGFIG RLDYQKGIDL IHWAIPELME 480 DDLQFVMLGS GDPLYEDWMR SAENTYRDKF RGWVGFSVPI SHRITAGCDI LLMPSRFEPC 540 GLNQLYAMRY GTVPVVHATG GLRDTVENFN PYAGEGRGEG TGWTFSPLTK DCMLNALKTA 600 IRTYRDHKST WEGLMRRCMQ KDFTWENAAI QYEQVFEWAF IDPPYIM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 8.0e-105 | 142 | 636 | 500 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 2.0e-143 | 138 | 645 | 516 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 6.0e-172 | 138 | 637 | 508 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 138 | 638 | 501 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 138 | 637 | 501 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25893.1 | 0 | 1 | 646 | 1 | 632 | starch synthase isoform I [Manihot esculenta] |
DDBJ | BAD18845.1 | 0 | 1 | 645 | 1 | 644 | starch synthase I precursor [Phaseolus vulgaris] |
EMBL | CBI23015.1 | 0 | 85 | 646 | 1 | 567 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277372.1 | 0 | 84 | 646 | 65 | 632 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321996.1 | 0 | 29 | 646 | 28 | 648 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 138 | 636 | 11 | 508 | A Chain A, Sialidase |
PDB | 3vue_A | 0 | 138 | 636 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 138 | 636 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 138 | 636 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 138 | 636 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO595058 | 492 | 154 | 645 | 0 |
HO581986 | 368 | 247 | 613 | 0 |
GO872237 | 347 | 298 | 644 | 0 |
GO842198 | 336 | 161 | 496 | 0 |
HO581986 | 34 | 612 | 645 | 0.0002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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