Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G084100.3 |
Family | GT5 |
Protein Properties | Length: 395 Molecular Weight: 44527.9 Isoelectric Point: 6.5068 |
Chromosome | Chromosome/Scaffold: 17 Start: 10121579 End: 10124326 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 3 | 387 | 0 |
QDILKRMALFCKAAVEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMKFTRSILVIHNIAHQGRGPVDDFFHVDLPEHYIDLFKLHDP VGGEHFNIFAAGLKAADRVVTVSHGYSWELKTSEGGWGLHNIIKENDWKFSGIVNGIDTKEWNPLFDVHLTSDGYTNYSLETLHTGKPQCKAALQKELGL PVRPDVPMIGFIGRLDQQKGVDLIAEAVPWMVGQDVQLVMLGTGRQDLEQMLRQFENQHHDKIRGWVGFSVKMAHRITAGSDVLLMPSRFEPCGLNQLYA MMYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFDGAEANKLIHALGNCLFTYREYKKSWEGLQRRGMTQDLSWDHAAEKYEEVL |
Full Sequence |
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Protein Sequence Length: 395 Download |
MAQDILKRMA LFCKAAVEVP WHVPCGGICY GDGNLVFIAN DWHTALLPVY LKAYYRDNGL 60 MKFTRSILVI HNIAHQGRGP VDDFFHVDLP EHYIDLFKLH DPVGGEHFNI FAAGLKAADR 120 VVTVSHGYSW ELKTSEGGWG LHNIIKENDW KFSGIVNGID TKEWNPLFDV HLTSDGYTNY 180 SLETLHTGKP QCKAALQKEL GLPVRPDVPM IGFIGRLDQQ KGVDLIAEAV PWMVGQDVQL 240 VMLGTGRQDL EQMLRQFENQ HHDKIRGWVG FSVKMAHRIT AGSDVLLMPS RFEPCGLNQL 300 YAMMYGTIPV VHAVGGLRDT VQPFDPFNES GLGWTFDGAE ANKLIHALGN CLFTYREYKK 360 SWEGLQRRGM TQDLSWDHAA EKYEEVLVAA KYQW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 7.0e-80 | 8 | 391 | 401 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 1.0e-111 | 7 | 385 | 390 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-140 | 7 | 386 | 385 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-163 | 4 | 387 | 384 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 3.0e-174 | 4 | 390 | 387 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 4 | 394 | 361 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 4 | 394 | 361 | 751 | starch synthase isoform II [Manihot esculenta] |
RefSeq | XP_002278470.1 | 0 | 4 | 394 | 382 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 4 | 394 | 352 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 4 | 394 | 364 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 3 | 388 | 119 | 509 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3vue_A | 0 | 3 | 388 | 119 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 39 | 386 | 135 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 39 | 393 | 135 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 39 | 393 | 135 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781048 | 392 | 4 | 395 | 0 |
HO445868 | 393 | 3 | 395 | 0 |
HO390058 | 394 | 3 | 395 | 0 |
HO777841 | 319 | 77 | 395 | 0 |
HO777841 | 81 | 4 | 84 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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