| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00021114m |
| Family | GT5 |
| Protein Properties | Length: 745 Molecular Weight: 84179.2 Isoelectric Point: 7.042 |
| Chromosome | Chromosome/Scaffold: 014191 Start: 2755 End: 10039 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 265 | 663 | 0 |
| HVVHICSELDPIVSCGSLSTYVAGVSCAVQGKGNLVEVILPKYTSINTDGIHGLRKAEAEYESYFGGIWHKNRIWTGTSSGVGLILIEPTQLSYFNRDML HGYPDDFERFSYFSRASLDYIVKSGKQPDILHIHNWETAIVAPLFWDIFAHQGLENTRVLLTCQDLDSQCLEEPNRLEMCGLDPRKLHRADRLQDPNETH LVNILKGGIVYSNKVVLMSSIHSRDVLTRGLGHGLEATLTAHKEKILIASHGLDGELWDPSKDIYLPRRYSANDIEGKSICREALKRRLGFHSGSSIIVG CICDGYSDIHNLKEAIHVALRRSAQVIFMEKLGSVMNSTVRALKEEFINLDDSIAFIEEYDETLAHLIYAGSDIILCSSFEDPSLQIAMKAIKYGCAPV | |||
| Full Sequence |
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| Protein Sequence Length: 745 Download |
| METPRLVVGA AMRALPPSPP TPQFRRRRLP HPRGGAHFLP FARAARPALL TRCSYSSKGN 60 SNSRGKPRRE SSGTVRLDGE ESSDQGTNLA NDQRKGDIRE LFSQAQRNIL YLNKQRLLAM 120 EELKKLQDEN ELLLQEIEVL EKEVHGVPVE AIKSSRFCEL LLRIDTMVIS GMINMQEASD 180 LREKVVNNRS IIGSNFSDIY HKSNTELLSE LRLFLRKPIE YATSYLCPNC YSYCLYIQDT 240 RQHGNSYILA IHILSSVITK WKPLHVVHIC SELDPIVSCG SLSTYVAGVS CAVQGKGNLV 300 EVILPKYTSI NTDGIHGLRK AEAEYESYFG GIWHKNRIWT GTSSGVGLIL IEPTQLSYFN 360 RDMLHGYPDD FERFSYFSRA SLDYIVKSGK QPDILHIHNW ETAIVAPLFW DIFAHQGLEN 420 TRVLLTCQDL DSQCLEEPNR LEMCGLDPRK LHRADRLQDP NETHLVNILK GGIVYSNKVV 480 LMSSIHSRDV LTRGLGHGLE ATLTAHKEKI LIASHGLDGE LWDPSKDIYL PRRYSANDIE 540 GKSICREALK RRLGFHSGSS IIVGCICDGY SDIHNLKEAI HVALRRSAQV IFMEKLGSVM 600 NSTVRALKEE FINLDDSIAF IEEYDETLAH LIYAGSDIIL CSSFEDPSLQ IAMKAIKYGC 660 APVQINFPND ESRQFEGNDC RNRVMSKYII STYGALSLLQ ALDSFKNDPS LWDQRMKDGM 720 VKGLAWDAEC YDLHWEAYSF IRKL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 3.0e-5 | 54 | 141 | 88 | + transferase, transferring glycosyl groups | ||
| PRK00654 | glgA | 8.0e-68 | 264 | 731 | 498 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 7.0e-74 | 265 | 731 | 505 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 2.0e-78 | 264 | 731 | 493 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PLN02939 | PLN02939 | 1.0e-97 | 264 | 728 | 482 | + transferase, transferring glycosyl groups | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK98690.1 | 0 | 1 | 744 | 1 | 720 | AC069158_2 Putative starch synthase [Oryza sativa Japonica Group] |
| GenBank | ACC78131.1 | 0 | 1 | 744 | 1 | 700 | starch synthase V precursor [Oryza sativa] |
| GenBank | EEC74203.1 | 0 | 1 | 744 | 1 | 697 | hypothetical protein OsI_09361 [Oryza sativa Indica Group] |
| RefSeq | NP_001048453.1 | 0 | 343 | 744 | 4 | 403 | Os02g0807100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001123603.1 | 0 | 1 | 744 | 1 | 701 | starch synthase V [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3guh_A | 4e-24 | 264 | 726 | 1 | 462 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 2r4u_A | 4e-24 | 264 | 726 | 1 | 462 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 2r4t_A | 4e-24 | 264 | 726 | 1 | 462 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 2qzs_A | 4e-24 | 264 | 726 | 1 | 462 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3cx4_A | 8e-24 | 264 | 726 | 1 | 462 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EL455989 | 356 | 192 | 546 | 0 |
| JG919461 | 160 | 399 | 558 | 0 |
| JG919461 | 120 | 559 | 677 | 0 |
| JG919461 | 9 | 391 | 399 | 0 |
| EY766100 | 279 | 277 | 554 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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