| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10022398 |
| Family | GT5 |
| Protein Properties | Length: 644 Molecular Weight: 70659 Isoelectric Point: 6.2071 |
| Chromosome | Chromosome/Scaffold: 38 Start: 289682 End: 294611 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 137 | 634 | 0 |
| IVFVSSEAAPYSKTGGLGDVCGSLPIALAARGHRVMVVTPRYMHSPESKTYASALDADCRIKISCFGAEQEVAFFHEYRDKVDWVFVDHPSYHRPGNPYG DTKGAFGDNQFRFALLCYAACEAPLVLPLGGFNYGEKCLFLVNDWHASLVPVLLAAKYRPYGVYKDARCILVIHNLAHQGVEPASTYGNLGLSPEWHGAL GWVFPTWARTHPLDTGEAINMLKGAIVTSDRILTVSKGYAWEITTVEGGYGLQELLSSRRVVLNGITNGIDICEWDPSSDKFTKSHYSADDLSGKVQCKM ALQKELGLPVRPECPLIGFIGRLDYQKGIDIIRWAIPELLQDDVQFVMLGSGDPLYENWMREAEAVYKDKFRGWVGFNVPISHRITAGADILLMPSRFEP CGLNQLYAMRYGTVPVVHGTGGLRDTVQKFDPFAQEGKGDGTGWTFAPLTKDSMLSALRTAVETYRDHKSSWEGIMKRGMEKDYTWENAATQYEQVFE | |||
| Full Sequence |
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| Protein Sequence Length: 644 Download |
| METLSLSHCV HQSFSKAEPV KSTRGSTRPV LGFAHFSRTN SNARFRLVAA ASGKDSSSPP 60 STVPDNQKNE DDAAKKGFLL GAETDASGSV VGFNLTSHSL AGDAASQPSV KEVAEKVEEI 120 AGTEGTEEAL TKVAHSIVFV SSEAAPYSKT GGLGDVCGSL PIALAARGHR VMVVTPRYMH 180 SPESKTYASA LDADCRIKIS CFGAEQEVAF FHEYRDKVDW VFVDHPSYHR PGNPYGDTKG 240 AFGDNQFRFA LLCYAACEAP LVLPLGGFNY GEKCLFLVND WHASLVPVLL AAKYRPYGVY 300 KDARCILVIH NLAHQGVEPA STYGNLGLSP EWHGALGWVF PTWARTHPLD TGEAINMLKG 360 AIVTSDRILT VSKGYAWEIT TVEGGYGLQE LLSSRRVVLN GITNGIDICE WDPSSDKFTK 420 SHYSADDLSG KVQCKMALQK ELGLPVRPEC PLIGFIGRLD YQKGIDIIRW AIPELLQDDV 480 QFVMLGSGDP LYENWMREAE AVYKDKFRGW VGFNVPISHR ITAGADILLM PSRFEPCGLN 540 QLYAMRYGTV PVVHGTGGLR DTVQKFDPFA QEGKGDGTGW TFAPLTKDSM LSALRTAVET 600 YRDHKSSWEG IMKRGMEKDY TWENAATQYE QVFEWAFIDP PYC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 4.0e-102 | 136 | 633 | 506 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 1.0e-146 | 137 | 642 | 508 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 1.0e-174 | 137 | 634 | 512 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 137 | 635 | 500 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 137 | 634 | 499 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV25893.1 | 0 | 69 | 642 | 59 | 631 | starch synthase isoform I [Manihot esculenta] |
| DDBJ | BAD18845.1 | 0 | 1 | 643 | 1 | 645 | starch synthase I precursor [Phaseolus vulgaris] |
| RefSeq | NP_197818.1 | 0 | 28 | 643 | 25 | 651 | SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002277372.1 | 0 | 83 | 642 | 72 | 631 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321996.1 | 0 | 12 | 642 | 16 | 647 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 136 | 633 | 11 | 508 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| PDB | 3vue_A | 0 | 136 | 633 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 136 | 633 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 136 | 633 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 136 | 633 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO595058 | 493 | 152 | 644 | 0 |
| GO872237 | 347 | 295 | 641 | 0 |
| HO581986 | 368 | 244 | 610 | 0 |
| GO842198 | 335 | 159 | 493 | 0 |
| HO581986 | 36 | 609 | 644 | 0.00006 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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