| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr6g012380.1 |
| Family | GT5 |
| Protein Properties | Length: 1015 Molecular Weight: 114941 Isoelectric Point: 6.4636 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2894150 End: 2903724 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 268 | 761 | 0 |
| NIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEAQDIGVRKRYKVAGQDMEVTYFQTYIDGVDFVFIDSPIFQHLESNIYGGNRV DILRRMALFCKAAVELLIMKLTIPQVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMNYTRSVLVIHNIAHQGRGPLDDFNIVDLPGNY IDLFRMYDPVGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLNGIINENDWKFRGIVNGVDTKDWNPQFDVHLKSEGYTNYTLETLQTGKRQCK AALQKELGLPVREDVPIIAFIGRLDQQKGVDLIGEAIPWMMSHDVQLIMLGTGRPDLEEMLRQFEWQHHDKIRGWVGFSVKMAHRITAGADILLMPSRFE PCGLNQLYAMNYGTVPVVHAVGGLRDTVQPFNPFDESGVGWTFDRAEANKLKAALWNCILTYRDYKKSWEGIQRRGMSQDLSWDNAAEQYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 1015 Download |
| MLSLGSDTTV LLFHTKNLKF TPKINTLNAD SGFSRSRGRL NYGSVGLKYK HIRAVGKSIG 60 NDENEDEDED DVLNATIEKS KKVLALQKEL IQQIAERKKL VSSIDSDSIP GLEGNGISYE 120 SSEKSASSDS NPQKGSTRSG SGSAVENQNG GTVLRSSVHS REKETQDVSS AGINQDFVEQ 180 KKRNDAEMAS SRQRFDEQFK NKRYEGKKSI RPDTVPKDLS SNIKTYSQKF ENLKRESESS 240 SKEVTNEPEN IESEGENPPP LAGPNVMNII LVAAECAPWS KTGGLGDVAG ALPKALARRG 300 HRVMVVAPHY GNYAEAQDIG VRKRYKVAGQ DMEVTYFQTY IDGVDFVFID SPIFQHLESN 360 IYGGNRVDIL RRMALFCKAA VELLIMKLTI PQVPWHVPCG GVCYGDGNLV FIANDWHTAL 420 LPVYLKAYYR DHGLMNYTRS VLVIHNIAHQ GRGPLDDFNI VDLPGNYIDL FRMYDPVGGE 480 HFNIFAAGLK TADRIVTVSH GYAWELKTSE GGWGLNGIIN ENDWKFRGIV NGVDTKDWNP 540 QFDVHLKSEG YTNYTLETLQ TGKRQCKAAL QKELGLPVRE DVPIIAFIGR LDQQKGVDLI 600 GEAIPWMMSH DVQLIMLGTG RPDLEEMLRQ FEWQHHDKIR GWVGFSVKMA HRITAGADIL 660 LMPSRFEPCG LNQLYAMNYG TVPVVHAVGG LRDTVQPFNP FDESGVGWTF DRAEANKLKA 720 ALWNCILTYR DYKKSWEGIQ RRGMSQDLSW DNAAEQYEEV LVAAKYQCLN HHLHQRNINF 780 FHHSHYFHDD DDDDFLALNQ HGPFAGFLTN STLDVLNDEV IVAPTRMRTN TTVYSYGLPL 840 EYVPLTLGCN LPRSFPIRDI ETRLDHERTS HDGYVHKYML ADGKTDSYYT IYEHIVNNMT 900 DTVLGVCCKD KNHDAGFRRI NFQEVYTFDF TPNPILRVTL WFFQFTWNND FQYFDIYIQK 960 RDYRSCTKDC AWFINRSGPC KLKGTSLDCF PWNPKVAIVY EHMQLGHDNN TLDM* 1020 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-85 | 267 | 765 | 526 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 8.0e-138 | 267 | 769 | 523 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 4.0e-171 | 267 | 760 | 499 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 267 | 764 | 502 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 268 | 761 | 500 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB26592.1 | 0 | 1 | 767 | 2 | 751 | granule-bound starch synthase isoform II, GBSSII [Pisum sativum=peas, BC1/9RR, Peptide, 752 aa] |
| GenBank | ACL98479.1 | 0 | 10 | 767 | 2 | 756 | starch synthase IIa-1 precursor [Glycine max] |
| GenBank | ACL98480.1 | 0 | 1 | 767 | 10 | 773 | starch synthase IIa-2 precursor [Glycine max] |
| GenBank | ACL98481.1 | 0 | 6 | 767 | 15 | 791 | starch synthase IIa precursor [Lotus japonicus] |
| Swiss-Prot | Q43093 | 0 | 1 | 767 | 2 | 751 | SSG2_PEA RecName: Full=Granule-bound starch synthase 2, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase II; Short=GBSS-II; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 267 | 762 | 10 | 509 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3vue_A | 0 | 267 | 762 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 267 | 760 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 267 | 760 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 267 | 760 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 458 | 772 | 0 |
| HO777841 | 418 | 45 | 460 | 0 |
| HO781048 | 416 | 366 | 775 | 0 |
| HO445868 | 446 | 322 | 767 | 0 |
| HO781048 | 38 | 329 | 366 | 0.91 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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