Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10004583m |
Family | GT47 |
Protein Properties | Length: 526 Molecular Weight: 59404.5 Isoelectric Point: 9.9556 |
Chromosome | Chromosome/Scaffold: 7 Start: 13210136 End: 13214019 |
Description | xylogalacturonan deficient 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 180 | 469 | 0 |
NRFKVWTYTEGEVPLFHDGPVNDIYGIEGQFMDEMCVDGPKTRSPFRANRPEDAHVFFVPFSVAKVIHYVYKPIRSVDGFSRDRLHRLIEDYVDVVATKY PYWNRSLGGDHFMVSCHDWAPDVIDGNPKLFEKFIRGLCNANTSEGFRPNVDVSIPEIYLPKGKLGPSLLGISPRIRSILAFFAGRSHGDIRKILFKHWK ERDNEVQVYDRLPPGKDYTRLMGMSKFCLCPSGWEVASPREVEAIYAGCVPVIISDNYSLPFSDVLNWDSFSIQIPVSRITEIKTILQSV |
Full Sequence |
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Protein Sequence Length: 526 Download |
MAAPRSRRCS LSLLTFISIS LILIISVSLF VFTTKPTNKP LIDYRNQFSI VSVSFPLSLS 60 PLGHNTSLAA PVSSPSSNPT NTSTLASSSP LVLPLLKESN TTTNTTLSSG YDDQQQNQNK 120 SPSPTSKRVV IKKRSGLDKI ESELAKARAA IKKAASTQNY VSSLYKNPAA FHQSHTEMMN 180 RFKVWTYTEG EVPLFHDGPV NDIYGIEGQF MDEMCVDGPK TRSPFRANRP EDAHVFFVPF 240 SVAKVIHYVY KPIRSVDGFS RDRLHRLIED YVDVVATKYP YWNRSLGGDH FMVSCHDWAP 300 DVIDGNPKLF EKFIRGLCNA NTSEGFRPNV DVSIPEIYLP KGKLGPSLLG ISPRIRSILA 360 FFAGRSHGDI RKILFKHWKE RDNEVQVYDR LPPGKDYTRL MGMSKFCLCP SGWEVASPRE 420 VEAIYAGCVP VIISDNYSLP FSDVLNWDSF SIQIPVSRIT EIKTILQSVS LVRYLKMYKR 480 VLEVKQHFVL NRPAKPYDVM HMMLHSIWLR RLNLRIGKKH LDPNK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-61 | 178 | 469 | 311 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK83577.1 | 0 | 178 | 517 | 1 | 340 | AT5g33290/F19N2_10 [Arabidopsis thaliana] |
GenBank | ABA18105.1 | 0 | 132 | 516 | 27 | 421 | exostosin family protein [Capsella rubella] |
GenBank | ABP03873.1 | 0 | 93 | 516 | 194 | 613 | Exostosin-like [Medicago truncatula] |
RefSeq | NP_189804.4 | 0 | 129 | 516 | 70 | 468 | catalytic/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_198314.2 | 0 | 1 | 517 | 1 | 499 | XGD1 (XYLOGALACTURONAN DEFICIENT 1); UDP-xylosyltransferase/ catalytic [Arabidopsis thaliana] |