Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma17g11870.2 |
Family | GT47 |
Protein Properties | Length: 500 Molecular Weight: 57389.9 Isoelectric Point: 9.0187 |
Chromosome | Chromosome/Scaffold: 17 Start: 8910932 End: 8914903 |
Description | xylogalacturonan deficient 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 159 | 446 | 0 |
KRFKVWVYEEGEQPLVHDGPANDIYSIEGQFIDEIDNDAKWSHFRAEHPDQAQVFFLPFSIANVVHYVYKPIRKHSDYEPIRLQRLVEDYIGVIANKYPY WNRSEGADHFLLSCHDWGPKVSYGNPKLFKNFIRVLCNANTSEGFLPNKDVSIPEVYLPKGKLGPPNLGQRPNDRSILAFFAGREHGDIRKILLNHWKGK DNDIQVHEYLPKGKNYTQLMGQSKFCLCPSGYEVASPRVVEAIHAGCVPVLISSSYSPPFTDVLNWSQFSVEIPVEKISEIKTILQSI |
Full Sequence |
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Protein Sequence Length: 500 Download |
MEFLRCPVSA FLFPAFCFII FFIFFPWKEQ NYATHFPPPL VLSTIIKDLN NHTNIITSPS 60 PSPSPSPSLQ PPPLLPLELL SNFTPANESY NNTTVLSSTI MKYPSLEKIE EGLARARASI 120 QESIRSRNYT SANRVNFVPK GSIYLNPHAF HQSHEEMLKR FKVWVYEEGE QPLVHDGPAN 180 DIYSIEGQFI DEIDNDAKWS HFRAEHPDQA QVFFLPFSIA NVVHYVYKPI RKHSDYEPIR 240 LQRLVEDYIG VIANKYPYWN RSEGADHFLL SCHDWGPKVS YGNPKLFKNF IRVLCNANTS 300 EGFLPNKDVS IPEVYLPKGK LGPPNLGQRP NDRSILAFFA GREHGDIRKI LLNHWKGKDN 360 DIQVHEYLPK GKNYTQLMGQ SKFCLCPSGY EVASPRVVEA IHAGCVPVLI SSSYSPPFTD 420 VLNWSQFSVE IPVEKISEIK TILQSISRNR YLRLHMNVLR VRRHFMLNRP AKPFDLMHMI 480 LHSIWLRRLN LRLIGSTSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-65 | 157 | 446 | 308 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABP03872.1 | 0 | 105 | 493 | 78 | 465 | Exostosin-like [Medicago truncatula] |
GenBank | ABP03873.1 | 0 | 46 | 496 | 197 | 616 | Exostosin-like [Medicago truncatula] |
EMBL | CBI25537.1 | 0 | 78 | 493 | 55 | 475 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263848.1 | 0 | 105 | 493 | 6 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515488.1 | 0 | 1 | 493 | 12 | 468 | catalytic, putative [Ricinus communis] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |