Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10039981 |
Family | GT47 |
Protein Properties | Length: 267 Molecular Weight: 30180.2 Isoelectric Point: 8.8686 |
Chromosome | Chromosome/Scaffold: 12 Start: 932930 End: 933730 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 3 | 265 | 0 |
KLFKIWTYKEGEKPLVHVGPMKNIYSIEGQFIDELERGNSPFPAQTPEEAHVFFLPVNIANIVRLQSTLIVKYLQALCLCIVDKVSILEPNIGVRPFHLS CHDWAPELPKYDYDRYKNIIRVLCNANMSEGFHPVRDVSLPELKTPPDRLTPSILKNSPENRDKLAFFVGGSHSLHSGGVVGSMEGERRRCQSPRNEYLK KGENYMKLMSKSKFCLCPSGYEVASLRLVEAIFAGCVPVVLSANYNPPFSKVLNWLKFILAIP |
Full Sequence |
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Protein Sequence Length: 267 Download |
MRKLFKIWTY KEGEKPLVHV GPMKNIYSIE GQFIDELERG NSPFPAQTPE EAHVFFLPVN 60 IANIVRLQST LIVKYLQALC LCIVDKVSIL EPNIGVRPFH LSCHDWAPEL PKYDYDRYKN 120 IIRVLCNANM SEGFHPVRDV SLPELKTPPD RLTPSILKNS PENRDKLAFF VGGSHSLHSG 180 GVVGSMEGER RRCQSPRNEY LKKGENYMKL MSKSKFCLCP SGYEVASLRL VEAIFAGCVP 240 VVLSANYNPP FSKVLNWLKF ILAIPN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-34 | 1 | 265 | 287 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_197526.4 | 0 | 1 | 266 | 75 | 347 | catalytic [Arabidopsis thaliana] |
Swiss-Prot | Q3E9A4 | 0 | 1 | 266 | 133 | 405 | GLYT5_ARATH RecName: Full=Probable glycosyltransferase At5g20260 |
RefSeq | XP_002285239.1 | 0 | 1 | 265 | 1 | 274 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324625.1 | 0 | 1 | 266 | 1 | 273 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331028.1 | 0 | 1 | 265 | 1 | 271 | predicted protein [Populus trichocarpa] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EH772765 | 274 | 3 | 264 | 0 |
EC939466 | 240 | 1 | 227 | 0 |
FE523338 | 273 | 1 | 265 | 0 |
CF437544 | 258 | 3 | 253 | 0 |
FD507587 | 230 | 44 | 265 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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