CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra000939
FamilyGH18
Protein PropertiesLength: 424 Molecular Weight: 48390.4 Isoelectric Point: 8.3605
ChromosomeChromosome/Scaffold: 03 Start: 14041561 End: 14043535
DescriptionGlycosyl hydrolase superfamily protein
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH181054141.3e-32
  PVLAYITPWNSKGYDMAKIYNSKFTHLSPVWYDLKSQGNGLVLEGRHNADKGWIQELRSRGNAMILPRVVLEAVPEELLKKKKLRAKAINLIVTECKEMG
  FDGIVLESWSRWAAYGVLHDPDMRKMALQFVKQLGDALHDQDMQFMYVIGPPRSETLQMYDFGPDDLQFLKDSVDGFSLMTYDFSNAQNPGPNAPLKWID
  LTLKLLLGSSNNVDSSLARKVLLGLNFYGNDFAISGGDGGAITGRDYLALLQKHKPTLHWDKESGEHLFMYRDDKNIKHAVFYPTLMSILLRLENARLWG
  IGISIWEIGQ
Full Sequence
Protein Sequence     Length: 424     Download
MARRREKRSS ATESSERRHN RDESKPRDGE PDSDRRLITI FVVFFIVIPA VSMAVYKVKF    60
ADRVIEAEPS IRQKGIIKTD IHFQEILTEH SKASENSSAR HYDYPVLAYI TPWNSKGYDM    120
AKIYNSKFTH LSPVWYDLKS QGNGLVLEGR HNADKGWIQE LRSRGNAMIL PRVVLEAVPE    180
ELLKKKKLRA KAINLIVTEC KEMGFDGIVL ESWSRWAAYG VLHDPDMRKM ALQFVKQLGD    240
ALHDQDMQFM YVIGPPRSET LQMYDFGPDD LQFLKDSVDG FSLMTYDFSN AQNPGPNAPL    300
KWIDLTLKLL LGSSNNVDSS LARKVLLGLN FYGNDFAISG GDGGAITGRD YLALLQKHKP    360
TLHWDKESGE HLFMYRDDKN IKHAVFYPTL MSILLRLENA RLWGIGISIW EIGQGLDYFF    420
HLL* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00704Glyco_hydro_185.0e-10193414249+
COG3858COG38582.0e-14193423238+
cd02874GH18_CFLE_spore_hydrolase2.0e-18106423342+
smart00636Glyco_188.0e-29106414352+
cd02876GH18_SI-CLP1.0e-145102423327+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAB61039.10141927434A_IG002N01.31 gene product [Arabidopsis thaliana]
EMBLCBI40499.1014231435unnamed protein product [Vitis vinifera]
RefSeqNP_192013.1014231430glycosyl hydrolase family 18 protein [Arabidopsis thaliana]
RefSeqXP_002320856.105942327399predicted protein [Populus trichocarpa]
RefSeqXP_002523373.107242372432chitinase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bxw_A05742337393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3bxw_B05742337393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3cz8_B0.000000117841285308A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis
PDB3cz8_A0.000000117841285308A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis
Transmembrane Domains
StartEnd
3756
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
EV11504528622870
EV11446828222830
EV1143802232024240
EV1142962222034240
EV1149662202054240
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_013_00129.1
Arabidopsis lyrata352729
Arabidopsis thalianaAT4G01040.1
Brachypodium distachyonBradi2g43770.1
Carica papayaevm.model.supercontig_273.9
Capsella rubellaCarubv10001405m
Chlamydomonas reinhardtiiCre03.g200650.t1.1
Citrus clementinaCiclev10020231m
Citrus sinensisorange1.1g014108morange1.1g014001m
Cucumis sativusCucsa.259130.2Cucsa.259130.1
Eucalyptus grandisEucgr.E00067.1
Fragaria vescamrna19212.1-v1.0-hybrid
Glycine maxGlyma03g41760.2Glyma19g44401.1Glyma03g41760.1
Gossypium raimondiiGorai.008G124300.1
Linum usitatissimumLus10005946Lus10029447
Malus domesticaMDP0000223446MDP0000126058
Manihot esculentacassava4.1_001521m
Medicago truncatulaMedtr5g025480.1
Mimulus guttatusmgv1a010899m
Oryza sativaLOC_Os01g43220.1
Panicum virgatumPavirv00054484mPavirv00033212m
Physcomitrella patensPp1s162_65V6.1
Phaseolus vulgarisPhvul.006G111900.1
Picea abiesMA_557825g0010
Populus trichocarpaPotri.014G096700.1Potri.014G096700.2Potri.014G096700.4Potri.014G096700.3
Prunus persicappa006146m
Ricinus communis29742.m001446
Setaria italicaSi002099m
Selaginella moellendorffii249085240
Sorghum bicolorSb03g028160.1
Thellungiella halophilaThhalv10028671m
Vitis viniferaGSVIVT01027076001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny