CAZyme Information

Basic Information
SpeciesPhyscomitrella patens
Cazyme IDPp1s162_65V6.1
FamilyGH18
Protein PropertiesLength: 440 Molecular Weight: 49531.6 Isoelectric Point: 7.7778
ChromosomeChromosome/Scaffold: 162 Start: 318820 End: 321833
DescriptionGlycosyl hydrolase superfamily protein
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH181924306.5e-31
  MLVDPAERKQAIDLIVNECKYMEYDGVVLEAWTAWAVYNILENPNLRHKALEFVLALGETLHSMKASKSGSEKRNMQLHFVIPPPSDYKKDPRVFTRADM
  TMLGNSIDGLSVMTYDFSGPNHPGPNAPAPWIDSTLASLRRMSEDSDAAPEVLLGLNFYGNDYTLPQGGGAIVGHQCVALLEKYKPSITWDKKSEEHYFM
  YDGEDAKHVVFYPTLASVSARLNTANKVGSGISIWEIGQ
Full Sequence
Protein Sequence     Length: 440     Download
MENSRRRKRS DGAVRGIAVN PRSMGRKRKS KVEGWKTLLL VSVLLVLVGA LCWVFLVQKP    60
FSASSSDEAA QDYWGLAELS VHERGLVVRN VDWDSIVNEH GRPWKDSGHR HFLNSVLVYV    120
TPWNSLGYDM AKKFRAKFTH VSPVWYQLQR GKDRLELLGR HDVDKQWIDA VRQDGSPMIV    180
PRVVLEGSPL HMLVDPAERK QAIDLIVNEC KYMEYDGVVL EAWTAWAVYN ILENPNLRHK    240
ALEFVLALGE TLHSMKASKS GSEKRNMQLH FVIPPPSDYK KDPRVFTRAD MTMLGNSIDG    300
LSVMTYDFSG PNHPGPNAPA PWIDSTLASL RRMSEDSDAA PEVLLGLNFY GNDYTLPQGG    360
GAIVGHQCVA LLEKYKPSIT WDKKSEEHYF MYDGEDAKHV VFYPTLASVS ARLNTANKVG    420
SGISIWEIGQ GLEYFFDLL* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00704Glyco_hydro_183.0e-6192430262+
COG3858COG38584.0e-14272439177+
smart00636Glyco_189.0e-18116430353+
cd02874GH18_CFLE_spore_hydrolase2.0e-18116430333+
cd02876GH18_SI-CLP1.0e-157112439333+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankABK24365.107743980454unknown [Picea sitchensis]
RefSeqNP_192013.107743965430glycosyl hydrolase family 18 protein [Arabidopsis thaliana]
RefSeqXP_001773378.10244391416predicted protein [Physcomitrella patens subsp. patens]
RefSeqXP_002320856.108243940399predicted protein [Populus trichocarpa]
RefSeqXP_002455966.108043970430hypothetical protein SORBIDRAFT_03g028160 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bxw_A0514397393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3bxw_B0514397393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
Transmembrane Domains
StartEnd
3557
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
BJ1892102101003090
BJ5945291532884400
HO638821399774400
HO610333399774400
CO4834302801113760
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_013_00129.1
Arabidopsis lyrata352729
Arabidopsis thalianaAT4G01040.1
Brachypodium distachyonBradi2g43770.1
Brassica rapaBra000939
Carica papayaevm.model.supercontig_273.9
Capsella rubellaCarubv10001405m
Chlamydomonas reinhardtiiCre03.g200650.t1.1
Citrus clementinaCiclev10020231m
Citrus sinensisorange1.1g014108morange1.1g014001m
Cucumis sativusCucsa.259130.2Cucsa.259130.1
Eucalyptus grandisEucgr.E00067.1
Fragaria vescamrna19212.1-v1.0-hybrid
Glycine maxGlyma03g41760.2Glyma19g44401.1Glyma03g41760.1
Gossypium raimondiiGorai.008G124300.1
Linum usitatissimumLus10005946Lus10029447
Malus domesticaMDP0000223446MDP0000126058
Manihot esculentacassava4.1_001521m
Medicago truncatulaMedtr5g025480.1
Mimulus guttatusmgv1a010899m
Oryza sativaLOC_Os01g43220.1
Panicum virgatumPavirv00054484mPavirv00033212m
Phaseolus vulgarisPhvul.006G111900.1
Picea abiesMA_557825g0010
Populus trichocarpaPotri.014G096700.1Potri.014G096700.2Potri.014G096700.4Potri.014G096700.3
Prunus persicappa006146m
Ricinus communis29742.m001446
Setaria italicaSi002099m
Selaginella moellendorffii249085240
Sorghum bicolorSb03g028160.1
Thellungiella halophilaThhalv10028671m
Vitis viniferaGSVIVT01027076001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny