Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 326150 |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 45121.9 Isoelectric Point: 8.7786 |
Chromosome | Chromosome/Scaffold: 6 Start: 7052406 End: 7054208 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 62 | 410 | 0 |
WEAVCKGGRNTKILVPQGKTFMLKPLAFIGPCKSSSISFSIRGNLVAPGYTWYAGRYPTWISFDSINGLVVTGGGTIDARGSLWWGNVNTRPSAMHFNNC NGLRISNLRHLNSPRNHVGLSCSQNIEVTGIRMTAPGDSPNTDGIDISNCKGVHIHDSVIATGDDCIAINSGSSHINITGIFCGPGHGISVGSLGVTGDF ATVEEVRVKNCTFTNTQNGVRIKTYQNGSGYARKISFEDIIMVASENPIIIDQTYHNGGTNGGRSKSSNSYQNCHLAAKQRTQSGNGKGVRVSDVRYSSI RGSSASDQAITLNCDADLGCSDIVMNNVNMVSATFGHKVFATCKNAHGS |
Full Sequence |
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Protein Sequence Length: 423 Download |
MKSSLLFFLL CLFQINKLGF CLEEEAQKSK NGVGSNGFIS VTSFGAIGDG ETDDTKAFLK 60 AWEAVCKGGR NTKILVPQGK TFMLKPLAFI GPCKSSSISF SIRGNLVAPG YTWYAGRYPT 120 WISFDSINGL VVTGGGTIDA RGSLWWGNVN TRPSAMHFNN CNGLRISNLR HLNSPRNHVG 180 LSCSQNIEVT GIRMTAPGDS PNTDGIDISN CKGVHIHDSV IATGDDCIAI NSGSSHINIT 240 GIFCGPGHGI SVGSLGVTGD FATVEEVRVK NCTFTNTQNG VRIKTYQNGS GYARKISFED 300 IIMVASENPI IIDQTYHNGG TNGGRSKSSN SYQNCHLAAK QRTQSGNGKG VRVSDVRYSS 360 IRGSSASDQA ITLNCDADLG CSDIVMNNVN MVSATFGHKV FATCKNAHGS FFASKVNCLK 420 KY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-84 | 39 | 407 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-86 | 39 | 408 | 381 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-93 | 41 | 410 | 381 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-107 | 40 | 409 | 373 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-109 | 35 | 409 | 377 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 8 | 419 | 3 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 6 | 419 | 4 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_197222.1 | 0 | 1 | 420 | 1 | 420 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 41 | 419 | 29 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 419 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-24 | 72 | 406 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-24 | 72 | 406 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-24 | 72 | 406 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-24 | 72 | 406 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-24 | 72 | 406 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |