Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g04520.1 |
Family | GH28 |
Protein Properties | Length: 414 Molecular Weight: 44717.8 Isoelectric Point: 8.3255 |
Chromosome | Chromosome/Scaffold: 2 Start: 3161421 End: 3163561 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 398 | 0 |
QTACSDGSSPVLVIPGGWTFLLSKIRFQGSCKSPITVQLDGNIVAPNYIWTAESDNLLTFYRIDNLTVAGNGQIDGRGAIWWSCYNHKRCTHRPNLLAFA YCNNLWVRNIHLKDSAEKHMTLYRCSQAHVDSVSVTAPAHSPNTDGINMALSDHVYISSCSMQTGDDCVSILSGTTDAYVTDTTCGPGHGISVGSLGGAN SKSALVERITVSNCSFVGTLTGVRIKSWQGGTGKANGFLFENLNMTAVRFPIDIDQFYCPPGNCPTRDGGVAITDARFINIHGTSSEKQAIQILCSQSVP CRGIYLHDVTLYWNKKNHVSQAQSRILNAHGT |
Full Sequence |
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Protein Sequence Length: 414 Download |
MLKRQGIWAG RTFFVLLLVL AVRSAAAARS PVLAAKARKQ GRYSVLDFHA AGDGKTDDAP 60 AFLEAWQTAC SDGSSPVLVI PGGWTFLLSK IRFQGSCKSP ITVQLDGNIV APNYIWTAES 120 DNLLTFYRID NLTVAGNGQI DGRGAIWWSC YNHKRCTHRP NLLAFAYCNN LWVRNIHLKD 180 SAEKHMTLYR CSQAHVDSVS VTAPAHSPNT DGINMALSDH VYISSCSMQT GDDCVSILSG 240 TTDAYVTDTT CGPGHGISVG SLGGANSKSA LVERITVSNC SFVGTLTGVR IKSWQGGTGK 300 ANGFLFENLN MTAVRFPIDI DQFYCPPGNC PTRDGGVAIT DARFINIHGT SSEKQAIQIL 360 CSQSVPCRGI YLHDVTLYWN KKNHVSQAQS RILNAHGTIV GNVVPEVQFI TAQ* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-82 | 43 | 405 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-86 | 45 | 397 | 358 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-86 | 44 | 377 | 345 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-86 | 70 | 377 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-93 | 45 | 405 | 370 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD68111.1 | 0 | 5 | 409 | 66 | 456 | putative polygalacturonase [Oryza sativa Japonica Group] |
EMBL | CBI36307.1 | 0 | 11 | 398 | 2 | 391 | unnamed protein product [Vitis vinifera] |
GenBank | EEE53960.1 | 0 | 5 | 295 | 113 | 391 | hypothetical protein OsJ_00563 [Oryza sativa Japonica Group] |
RefSeq | XP_002457261.1 | 0 | 2 | 409 | 16 | 407 | hypothetical protein SORBIDRAFT_03g004360 [Sorghum bicolor] |
RefSeq | XP_002529092.1 | 0 | 14 | 405 | 9 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-20 | 78 | 363 | 26 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-20 | 78 | 363 | 26 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-20 | 78 | 363 | 26 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-20 | 78 | 363 | 26 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-20 | 78 | 363 | 26 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |