Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb09g029500.1 |
Family | GH28 |
Protein Properties | Length: 538 Molecular Weight: 57410.7 Isoelectric Point: 7.5695 |
Chromosome | Chromosome/Scaffold: 9 Start: 58142985 End: 58147241 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 163 | 488 | 0 |
AAACKVEASTVLVPSEHEFVVGPISFSGPYCKPNILFQLDGTILAQTSARVWGSGLLQWLEFTKLTGIAIQGSGVINGRGQQWWTYSDPNDDDNDDAYYV ELDKMPQIKPTALRFYGSSNVTVTGITIVNSSQCHLKFDSCQGVMVHDLTISSPEHSPNTDGIHLQNSKEVSIHHTNLACGDDCVSIQTGCSDVNIHNVN CGPGHGISIGGLGRYNTKACVSNITVRDVKMFRTMTGVRIKTWQGGSGLVQGIRFSNIQVSEVQTPIIIDQFYCDKTTCRNQTSAVAVSGVQYENIRGTF TIKPAHFACSDSSPCSEITLTGIQLK |
Full Sequence |
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Protein Sequence Length: 538 Download |
MMLRLKGLTF LLLLVLCSSV HQCEARSGKN WSWRRSSSRA PSTSAFRRKG KAKSSSSGSH 60 KQSGKGSRQS PYQPSPAITP ASPSGDPVQG NGSQAAPAPA MPAPNGGGYG YPLLTPPPLQ 120 PSPSATSPPA APSSQDTVFN VVDFGAKGDG VTDDTQAFEA AWAAACKVEA STVLVPSEHE 180 FVVGPISFSG PYCKPNILFQ LDGTILAQTS ARVWGSGLLQ WLEFTKLTGI AIQGSGVING 240 RGQQWWTYSD PNDDDNDDAY YVELDKMPQI KPTALRFYGS SNVTVTGITI VNSSQCHLKF 300 DSCQGVMVHD LTISSPEHSP NTDGIHLQNS KEVSIHHTNL ACGDDCVSIQ TGCSDVNIHN 360 VNCGPGHGIS IGGLGRYNTK ACVSNITVRD VKMFRTMTGV RIKTWQGGSG LVQGIRFSNI 420 QVSEVQTPII IDQFYCDKTT CRNQTSAVAV SGVQYENIRG TFTIKPAHFA CSDSSPCSEI 480 TLTGIQLKPL LVPQYHLYNP FCWQAFGELY TPTVPPISCL QIGKPAGNSV LSDGDLC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-63 | 139 | 487 | 354 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-64 | 136 | 488 | 357 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 6.0e-68 | 137 | 488 | 358 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-75 | 171 | 487 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-87 | 138 | 516 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT39158.1 | 0 | 1 | 537 | 1 | 571 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | ACF79104.1 | 0 | 17 | 537 | 19 | 496 | unknown [Zea mays] |
GenBank | EEC79746.1 | 0 | 1 | 537 | 1 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
GenBank | EEE64806.1 | 0 | 1 | 537 | 1 | 534 | hypothetical protein OsJ_19662 [Oryza sativa Japonica Group] |
RefSeq | XP_002441571.1 | 0 | 1 | 537 | 1 | 537 | hypothetical protein SORBIDRAFT_09g029500 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-28 | 215 | 438 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-18 | 237 | 487 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-18 | 237 | 487 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-18 | 237 | 487 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-18 | 237 | 487 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |