Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10036205 |
Family | GH28 |
Protein Properties | Length: 183 Molecular Weight: 19754.9 Isoelectric Point: 6.2312 |
Chromosome | Chromosome/Scaffold: 27 Start: 147234 End: 148973 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 11 | 165 | 0 |
APDESPNTDGIEISHSSHVRIYDSFIGTGDDCIAVNGFSSDVNITHISCGPGHGISIGSLGKNGAYETVEDIRVTDSTFTRTQNCARIKTWKGGKGYVRK VTFERITLVEARNPIIIDQNYMSRHYVPAEPSSDVDISDVLYREVHGSTTDKKAV |
Full Sequence |
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Protein Sequence Length: 183 Download |
MQVSNTSFSV APDESPNTDG IEISHSSHVR IYDSFIGTGD DCIAVNGFSS DVNITHISCG 60 PGHGISIGSL GKNGAYETVE DIRVTDSTFT RTQNCARIKT WKGGKGYVRK VTFERITLVE 120 ARNPIIIDQN YMSRHYVPAE PSSDVDISDV LYREVHGSTT DKKAVPSSVG NGAATLLWRT 180 LT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-42 | 11 | 165 | 157 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-45 | 11 | 165 | 157 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 3.0e-46 | 10 | 165 | 156 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-46 | 11 | 172 | 163 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 5.0e-56 | 10 | 165 | 156 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABO81149.1 | 0 | 11 | 165 | 163 | 319 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002266797.1 | 0 | 11 | 165 | 169 | 322 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 3 | 165 | 184 | 345 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332134.1 | 0 | 1 | 174 | 150 | 319 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530440.1 | 0 | 10 | 170 | 2 | 161 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 0.000000000000002 | 17 | 158 | 157 | 294 | A Chain A, Dengue Serotype 3 Rna-dependent Rna Polymerase Bound To Nitd-107 |
PDB | 1ib4_A | 0.000000000000002 | 17 | 158 | 157 | 294 | A Chain A, Dengue Serotype 3 Rna-dependent Rna Polymerase Bound To Nitd-107 |
PDB | 1ia5_A | 0.000000000000002 | 17 | 158 | 157 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000000000007 | 17 | 161 | 152 | 294 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000007 | 17 | 161 | 152 | 294 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 156 | 10 | 165 | 0 |
GO025017 | 156 | 11 | 165 | 0 |
GT141262 | 156 | 10 | 165 | 0 |
GO013888 | 155 | 11 | 165 | 0 |
AM810267 | 146 | 10 | 155 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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