Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.096470.1 |
Family | GH28 |
Protein Properties | Length: 421 Molecular Weight: 45083.6 Isoelectric Point: 6.1456 |
Chromosome | Chromosome/Scaffold: 00919 Start: 2084417 End: 2087475 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 84 | 414 | 0 |
WKAVCEANTPSAMLVPSTKTFLLNPVQFQGPCMSSSVGVQILGKIVAPSDLDAWKDFDAKNWLLFSNVSRLVIQGNGEIDGQGAAWWDRDSDGKPTALAI YDCDGLHLSGLTHSNSPKSHMHIVRCNHASISKLNIVAPENSPNTDGIDVAHSSHVKIHNCNIGTGDDCIAISEGTSNIHIANIQCGPGHGISIGSLGKD GTSSSVEDVRVQNCHLKGTMYGARIKTWQGGAGYARKISFQGITLDQVHKPILIDQYYCNGKTDCKNQTSAVEVSDVLYQGLHGTSATEVAVELSCSETV GCRNIVLEDIDIRYADSDKIAQSSCDDAHGT |
Full Sequence |
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Protein Sequence Length: 421 Download |
MATKSNFLFD MIQNSCFSCA GFVVAIVIGI CVIFALRKHH HPESNADPNN NDPVITNFKA 60 IDVVQYGAAG DGKTDDSRAF LKAWKAVCEA NTPSAMLVPS TKTFLLNPVQ FQGPCMSSSV 120 GVQILGKIVA PSDLDAWKDF DAKNWLLFSN VSRLVIQGNG EIDGQGAAWW DRDSDGKPTA 180 LAIYDCDGLH LSGLTHSNSP KSHMHIVRCN HASISKLNIV APENSPNTDG IDVAHSSHVK 240 IHNCNIGTGD DCIAISEGTS NIHIANIQCG PGHGISIGSL GKDGTSSSVE DVRVQNCHLK 300 GTMYGARIKT WQGGAGYARK ISFQGITLDQ VHKPILIDQY YCNGKTDCKN QTSAVEVSDV 360 LYQGLHGTSA TEVAVELSCS ETVGCRNIVL EDIDIRYADS DKIAQSSCDD AHGTSTNTFP 420 A |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-93 | 61 | 396 | 346 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 3.0e-94 | 61 | 411 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-110 | 63 | 416 | 362 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-122 | 55 | 418 | 367 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-139 | 54 | 421 | 372 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62658.1 | 0 | 61 | 420 | 55 | 428 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_001078162.1 | 0 | 54 | 421 | 16 | 381 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566524.1 | 0 | 54 | 421 | 17 | 385 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 59 | 420 | 25 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 61 | 420 | 28 | 387 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 156 | 377 | 113 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-19 | 76 | 372 | 7 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-19 | 76 | 372 | 7 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-19 | 76 | 372 | 7 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-19 | 76 | 372 | 7 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |