Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.012G119700.1 |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 40172.9 Isoelectric Point: 5.3801 |
Chromosome | Chromosome/Scaffold: 12 Start: 13976644 End: 13978949 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 364 | 0 |
CQASEEMPTLEVPAGKTFLLKSVSFSGPCMSKNPHVLIEGTIVAPNSFDSWDDDDYEKWIGFTAVVGLIVDGGGRFDGRGEAWWKACNALHFNKCNGLRL SNLHHVNSQKGHICINACDDVEVSNLQILAPDESPNTDGIDISESNHVNIHDSFIGTGDDCIAINGFSTSINVTGVKCGPGHGISIGSLGKDGAYETVED VHVKSCAFKGTQNGVRIKTWETGSGYVRKITFEDITFVNSENPIIIDQQYNPNGNRGGSGIKISDVTYRNVRGSSADEVAIALNCAGKAACTNIVMDNVK ITSSNPGKQIRASCNNAKGT |
Full Sequence |
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Protein Sequence Length: 378 Download |
MASYCSCRLI SEATGRRFNV LDYGADGNGK IDATPAFQKA WGDFCQASEE MPTLEVPAGK 60 TFLLKSVSFS GPCMSKNPHV LIEGTIVAPN SFDSWDDDDY EKWIGFTAVV GLIVDGGGRF 120 DGRGEAWWKA CNALHFNKCN GLRLSNLHHV NSQKGHICIN ACDDVEVSNL QILAPDESPN 180 TDGIDISESN HVNIHDSFIG TGDDCIAING FSTSINVTGV KCGPGHGISI GSLGKDGAYE 240 TVEDVHVKSC AFKGTQNGVR IKTWETGSGY VRKITFEDIT FVNSENPIII DQQYNPNGNR 300 GGSGIKISDV TYRNVRGSSA DEVAIALNCA GKAACTNIVM DNVKITSSNP GKQIRASCNN 360 AKGTAISASP TVPCLSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-84 | 19 | 361 | 360 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-88 | 53 | 367 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-100 | 16 | 377 | 379 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-102 | 18 | 376 | 370 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-118 | 15 | 363 | 352 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 376 | 13 | 397 | PGN [Glycine max] |
RefSeq | NP_197222.1 | 0 | 20 | 375 | 41 | 419 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 16 | 376 | 25 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332134.1 | 0 | 1 | 377 | 1 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 18 | 376 | 28 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-21 | 116 | 347 | 123 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-21 | 51 | 360 | 23 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-21 | 51 | 360 | 23 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-21 | 51 | 360 | 23 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-21 | 51 | 360 | 23 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX192293 | 265 | 56 | 316 | 0 |
CV536748 | 256 | 84 | 329 | 0 |
EY474520 | 244 | 133 | 376 | 0 |
GT141262 | 230 | 147 | 376 | 0 |
EL454770 | 276 | 13 | 274 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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