Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.004G011800.1 |
Family | GH28 |
Protein Properties | Length: 428 Molecular Weight: 46050.8 Isoelectric Point: 7.1033 |
Chromosome | Chromosome/Scaffold: 04 Start: 1166904 End: 1170781 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 390 | 0 |
EATCKVEGSTMVVPSGSVFLVKPVSFSGPNCEQNIVFQLDGKIIAPTSSEAWGSGTLQWLEFSKLKKITIRGKGVIDGQGSVWWNDSPNGKLPSTKPTAL RFYGSDGVTVTGITIQNSQQTHLKFDSSTNIQVFDINVSSPGDSPNTDGIHLQNSQNVVIYSTTLACGDDCISIQTGCSDVYVHNVNCGPGHGISIGSLG KENTKACVRNITVRDVTIQNTLTGVRIKTWQGGSGSVQNIMFSNVQVSGVETPISIDQYYCDGGKCRNESSAVAVSGIHYVNIKGTYTKEPIYFACSDNL PCTGITLDTIQLQSSQNHDRV |
Full Sequence |
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Protein Sequence Length: 428 Download |
MKNMNMNMNA KIIALVTAIA FSVWFSSCSA TRVSHWRKLK ATSATFNVLD YGAKGDGHAD 60 DTQAFAEAWE ATCKVEGSTM VVPSGSVFLV KPVSFSGPNC EQNIVFQLDG KIIAPTSSEA 120 WGSGTLQWLE FSKLKKITIR GKGVIDGQGS VWWNDSPNGK LPSTKPTALR FYGSDGVTVT 180 GITIQNSQQT HLKFDSSTNI QVFDINVSSP GDSPNTDGIH LQNSQNVVIY STTLACGDDC 240 ISIQTGCSDV YVHNVNCGPG HGISIGSLGK ENTKACVRNI TVRDVTIQNT LTGVRIKTWQ 300 GGSGSVQNIM FSNVQVSGVE TPISIDQYYC DGGKCRNESS AVAVSGIHYV NIKGTYTKEP 360 IYFACSDNLP CTGITLDTIQ LQSSQNHDRV PFCWESFGEL KTKTVPPVEC LQRNPSKTGF 420 ASNIDSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-81 | 40 | 384 | 352 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 4.0e-84 | 46 | 381 | 341 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-85 | 78 | 381 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-94 | 42 | 382 | 348 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-114 | 46 | 416 | 378 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 427 | 1 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | AAD46484.1 | 0 | 6 | 427 | 1 | 439 | polygalacturonase PG2 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 427 | 1 | 443 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 43 | 427 | 98 | 510 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002521450.1 | 0 | 36 | 423 | 66 | 465 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-27 | 137 | 389 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-27 | 137 | 389 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-27 | 137 | 389 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-27 | 137 | 389 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-27 | 137 | 389 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |