Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_020_00147.1 |
Family | GH28 |
Protein Properties | Length: 438 Molecular Weight: 48377.4 Isoelectric Point: 8.282 |
Chromosome | Chromosome/Scaffold: 20 Start: 1204032 End: 1208160 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 402 | 0 |
VACSSPSRSRIEISSGNTYLVGPMYFGGPCRSKVTLRVSGTIVAPKDPDVWDGLNPRKWLYFHGLKHFTMDGGGVINGMGAEWWSRSCKINITNPCRHAP TALTFHKCKFLKVSNLKTLNSQQMHMAFTNCVRVRASQLKVIAPIDSPNTDGIHISASSKVEVTNIIINTGDDCISIVSNSSQIRIRNIYCRAGHGISIG SMGKYNSWSEVKDVSVDEAFLSHTENGVRIKTWQGGSGFAQRINFRNVLMENVSNPIIIDQYYCDSFLPCLNQTMAVKVDHISFVNIKGTSATEEAIHIA CSDRFPCEDVYLEDVELLTYSGGLTTAFCWNAM |
Full Sequence |
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Protein Sequence Length: 438 Download |
MMTKLSFLIL LFLLANLISV QGFDPYLIKL PSQFPRRLNS KTLVLSVNDF GAIGDGVHND 60 TKAFQDVWKV ACSSPSRSRI EISSGNTYLV GPMYFGGPCR SKVTLRVSGT IVAPKDPDVW 120 DGLNPRKWLY FHGLKHFTMD GGGVINGMGA EWWSRSCKIN ITNPCRHAPT ALTFHKCKFL 180 KVSNLKTLNS QQMHMAFTNC VRVRASQLKV IAPIDSPNTD GIHISASSKV EVTNIIINTG 240 DDCISIVSNS SQIRIRNIYC RAGHGISIGS MGKYNSWSEV KDVSVDEAFL SHTENGVRIK 300 TWQGGSGFAQ RINFRNVLME NVSNPIIIDQ YYCDSFLPCL NQTMAVKVDH ISFVNIKGTS 360 ATEEAIHIAC SDRFPCEDVY LEDVELLTYS GGLTTAFCWN AMGSSLGRVY PPSCLSHSCN 420 ESFIEQKALP TSSHQTF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 9.0e-87 | 40 | 416 | 378 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-91 | 40 | 414 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-99 | 86 | 401 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-111 | 45 | 411 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 20 | 437 | 420 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABM67700.1 | 0 | 9 | 437 | 19 | 445 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 9 | 437 | 16 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002281827.1 | 0 | 9 | 437 | 10 | 435 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 9 | 437 | 16 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 13 | 427 | 1 | 415 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-21 | 141 | 332 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-20 | 138 | 400 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 138 | 400 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 138 | 400 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 138 | 400 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |