Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a022147m |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 44198.4 Isoelectric Point: 9.1659 |
Chromosome | Chromosome/Scaffold: 361 Start: 101241 End: 104423 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 398 | 0 |
EKACNSSESTKITIPKDKTYYVKHINFTGPCHSAISIEIQGTIKSFPQMYDIPRRLWIKFEDVRNIDVYGGGTIDGNGEVWWKNSCRIKKTKALTYKNCT NLRMRNLKLLNAQQMHVNFQDCNGVEASELLVVAPEDSPNTDGIHVTRTSNINILDSQIRTGDDCISIVNGSRNVEVRNIVCGPGHGISIGSLGEDKTEN YVTDIFVKGAKLTGTTNGLRIKTWQGGSGIARNIVFEDIQMTNVSNPIIINQSYCDKNKKCQTEKSAVQVENVIYRNIRGTSASKMAINLKCSDSVPCRN IAVENVLLTAHTKGEKVESFCSN |
Full Sequence |
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Protein Sequence Length: 398 Download |
MRPTIYFVTL FVLILLCSSS SCFGRKAHSK AKHSSKSRHA KITNEAKQVQ VLNIEDFGAI 60 ADGKSDNFQA FKKAWEKACN SSESTKITIP KDKTYYVKHI NFTGPCHSAI SIEIQGTIKS 120 FPQMYDIPRR LWIKFEDVRN IDVYGGGTID GNGEVWWKNS CRIKKTKALT YKNCTNLRMR 180 NLKLLNAQQM HVNFQDCNGV EASELLVVAP EDSPNTDGIH VTRTSNINIL DSQIRTGDDC 240 ISIVNGSRNV EVRNIVCGPG HGISIGSLGE DKTENYVTDI FVKGAKLTGT TNGLRIKTWQ 300 GGSGIARNIV FEDIQMTNVS NPIIINQSYC DKNKKCQTEK SAVQVENVIY RNIRGTSASK 360 MAINLKCSDS VPCRNIAVEN VLLTAHTKGE KVESFCSN |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-91 | 50 | 398 | 354 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-93 | 53 | 398 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-107 | 79 | 398 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-127 | 52 | 381 | 340 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-131 | 50 | 396 | 358 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF21207.1 | 0 | 1 | 398 | 1 | 424 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CBI29907.1 | 0 | 25 | 398 | 51 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_187454.2 | 0 | 1 | 398 | 1 | 425 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 50 | 398 | 7 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 21 | 398 | 22 | 433 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-27 | 140 | 387 | 110 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 4e-18 | 53 | 383 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 1e-16 | 139 | 360 | 69 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 2e-16 | 115 | 398 | 41 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 115 | 398 | 41 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |