Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_031716m |
Family | GH28 |
Protein Properties | Length: 340 Molecular Weight: 36224.9 Isoelectric Point: 6.3758 |
Chromosome | Chromosome/Scaffold: 04151 Start: 277664 End: 279830 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 42 | 279 | 0 |
TDDSKALTFSACNNLQLSGLSHVNSQSAHIHITSSNSVLVSNLYIIAPASSPNTDGIDISHSTDAWIHDSTIGTGDDCIAIGGDSSNIKITGVTCGPGHG ISIGSLGHNGNTDIVEEVHVKDCILKRTTNGVRIKTWQGGSGYARKISFENITLDAVANPIIIDQFYCDHKFKCKNQTSAVKVSNVIYKGVHGTSITEDS IKLMCSQSISCSDIVLSDINIVSANSGKPTHAFCSNAY |
Full Sequence |
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Protein Sequence Length: 340 Download |
MLGRVQEFLL ILLVVALASW RPTTEASTAD VMQHGAAGDG KTDDSKALTF SACNNLQLSG 60 LSHVNSQSAH IHITSSNSVL VSNLYIIAPA SSPNTDGIDI SHSTDAWIHD STIGTGDDCI 120 AIGGDSSNIK ITGVTCGPGH GISIGSLGHN GNTDIVEEVH VKDCILKRTT NGVRIKTWQG 180 GSGYARKISF ENITLDAVAN PIIIDQFYCD HKFKCKNQTS AVKVSNVIYK GVHGTSITED 240 SIKLMCSQSI SCSDIVLSDI NIVSANSGKP THAFCSNAYG TNSLSNPLVN CLSIPLTYEG 300 CHPPENCLPP SQSTKFLDFH NVYLFFLSFL LCFSFLNPL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-79 | 46 | 292 | 247 | + polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-82 | 47 | 315 | 274 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 7.0e-84 | 47 | 283 | 237 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 44 | 292 | 246 | 493 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 47 | 294 | 150 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 41 | 293 | 141 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 0 | 1 | 339 | 382 | 767 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 0 | 41 | 274 | 127 | 358 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-19 | 94 | 277 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-19 | 94 | 277 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-19 | 94 | 277 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-19 | 94 | 277 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-19 | 94 | 277 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |