Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G115700.1 |
Family | GH28 |
Protein Properties | Length: 527 Molecular Weight: 56521.8 Isoelectric Point: 5.3577 |
Chromosome | Chromosome/Scaffold: 14 Start: 9013373 End: 9015475 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 154 | 482 | 0 |
WDAACNQDDSAVILVPYGFEFMIQSTIFTGPCQGGLVFQVDGTLMPPDGPESWPQKNSRRQWLVFYRINEMSLLGGGVIDGRGEKWWDLPCKPHKGINGT TMPGPCDSPIAIRFFMSSNLTVQGLKIKNSPQFNFRFDNCKNVHVESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITC GPSHGISIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQGGSGAVSGITFSNIHMDNVRNPIIIDQFYCLSKGCTNQTSALSVSDILYENIKGTYN IRSPPMHFACSDSVPCTNLTLSDVELLPA |
Full Sequence |
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Protein Sequence Length: 527 Download |
MKDSRVSLLV FGISFICLFL CIQARRHYHA QHHKHSHLHK SSTIPEPPTP PPEPASPPPE 60 PASPPPEPAS PPPEPASPPP EPASPPPVPA SPSPEPASPP PVPASPPPVP ASPPPLPANP 120 SGGSGNSTGV FDVRSFGAIG DGITDDTDAF KMAWDAACNQ DDSAVILVPY GFEFMIQSTI 180 FTGPCQGGLV FQVDGTLMPP DGPESWPQKN SRRQWLVFYR INEMSLLGGG VIDGRGEKWW 240 DLPCKPHKGI NGTTMPGPCD SPIAIRFFMS SNLTVQGLKI KNSPQFNFRF DNCKNVHVES 300 IHITAPALSP NTDGIHIENT NGVEIYNSVI SNGDDCVSIG SGCYDVDIRN ITCGPSHGIS 360 IGSLGNHNSR ACVSNITVRD SVIRVSDNGV RIKTWQGGSG AVSGITFSNI HMDNVRNPII 420 IDQFYCLSKG CTNQTSALSV SDILYENIKG TYNIRSPPMH FACSDSVPCT NLTLSDVELL 480 PAEGDLVLDP YCWNAYGNFR TLTIPPVSCL MEGIPRSNLN NEMDYC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 5.0e-71 | 153 | 510 | 364 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-76 | 120 | 506 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-91 | 158 | 479 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-92 | 151 | 479 | 332 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-110 | 151 | 506 | 358 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 122 | 526 | 80 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0.003 | 1 | 46 | 1 | 46 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002302793.1 | 0 | 121 | 526 | 58 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 122 | 526 | 34 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 1 | 526 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-27 | 194 | 479 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-27 | 194 | 479 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-27 | 194 | 479 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-27 | 194 | 479 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-27 | 194 | 479 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |