Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 857359 |
Family | GH28 |
Protein Properties | Length: 432 Molecular Weight: 46911.6 Isoelectric Point: 8.2832 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 18 | 341 | 0 |
GKGKTTSLVINANETYIIQPQLFQGPCASRNLHIQIDGKLEAPKMVKEWGNNGSKCWLCFTNVTGLVLNGSGILHPHGEAWWSSIEHSHRPRTIGFNGSS NIIYNGLTQMNSPKNHISILNCTNVTLSNFHLIAPKDSPNTDGIDIALSNNIRIFNSSIQTGDDCVAINGGSYDINITHVACGPGHGISIGSLGRGGEND TVQNVKVRHCSFNGTKNGARIKTWTGGQGIAKNILYENITLTDANYPIIIDQHYCNGGHNCTKEATTAVKVSNVTFRYFKGTCANNIAIKLDCDEVTGCQ DIVMEHINITSSSTNMPLTAYCQF |
Full Sequence |
---|
Protein Sequence Length: 432 Download |
MVQMAFKGAW KALCEANGKG KTTSLVINAN ETYIIQPQLF QGPCASRNLH IQIDGKLEAP 60 KMVKEWGNNG SKCWLCFTNV TGLVLNGSGI LHPHGEAWWS SIEHSHRPRT IGFNGSSNII 120 YNGLTQMNSP KNHISILNCT NVTLSNFHLI APKDSPNTDG IDIALSNNIR IFNSSIQTGD 180 DCVAINGGSY DINITHVACG PGHGISIGSL GRGGENDTVQ NVKVRHCSFN GTKNGARIKT 240 WTGGQGIAKN ILYENITLTD ANYPIIIDQH YCNGGHNCTK EATTAVKVSN VTFRYFKGTC 300 ANNIAIKLDC DEVTGCQDIV MEHINITSSS TNMPLTAYCQ FADIVSHFVS MHIKCGFNEE 360 PLVPVRPPRH VEPPTPPTKP PTMFPKPLAP AKPPVYYAKP PVYYAKPPAP NAQPLAPNAQ 420 PPMLSFLSYF I* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-71 | 5 | 345 | 350 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-80 | 32 | 339 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-80 | 5 | 330 | 333 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-85 | 5 | 331 | 330 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 5.0e-106 | 5 | 343 | 340 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA22564.1 | 1e-16 | 5 | 52 | 214 | 261 | putative protein [Arabidopsis thaliana] |
EMBL | CAA22564.1 | 0 | 49 | 431 | 5 | 503 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_194963.2 | 0 | 5 | 271 | 53 | 322 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_194964.2 | 0 | 62 | 430 | 1 | 340 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680757.1 | 0 | 1 | 431 | 1 | 486 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-23 | 75 | 339 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-23 | 75 | 339 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-23 | 75 | 339 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-23 | 75 | 339 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-23 | 75 | 339 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CV536748 | 260 | 55 | 310 | 0 |
CV538127 | 227 | 22 | 244 | 0 |
DR050772 | 292 | 49 | 326 | 0 |
EY474520 | 222 | 108 | 329 | 0 |
GT141262 | 206 | 124 | 329 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|