Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma03g23881.1 |
Family | GH28 |
Protein Properties | Length: 353 Molecular Weight: 37666.1 Isoelectric Point: 8.5426 |
Chromosome | Chromosome/Scaffold: 03 Start: 30534214 End: 30538063 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 348 | 0 |
AWQHTCGTQGTSTLVIPPKGVFLVTNITLKGPCKARSIHILLQGKIVAPAKDAWAKGLDPLILISNLNGLTIDGSGGQIDGFGSTWWKCRSCLRPRVISF VSCNDLTVRKLSISNSPRAHITIDGCNGAIFSNINIHAPRNSPNTDGFDIAFSKNILIEDCTIATGDDCIAINGGSSYINATGIACGPGHGISIGSLGKH NAHETVEEIYVYNCSFTKTTNGARIKTVPGGTGYAKRITFEKIKLIQTRNPIILDQFYHSVHLTTGVVQVSEVTYRGFQGTSANDKAINLDCGPS |
Full Sequence |
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Protein Sequence Length: 353 Download |
MQRLIMTCVL IIGFVSPCLC LRSMVGTKNT FYNVMDFGAH GNGKSDDSHA FSSAWQHTCG 60 TQGTSTLVIP PKGVFLVTNI TLKGPCKARS IHILLQGKIV APAKDAWAKG LDPLILISNL 120 NGLTIDGSGG QIDGFGSTWW KCRSCLRPRV ISFVSCNDLT VRKLSISNSP RAHITIDGCN 180 GAIFSNINIH APRNSPNTDG FDIAFSKNIL IEDCTIATGD DCIAINGGSS YINATGIACG 240 PGHGISIGSL GKHNAHETVE EIYVYNCSFT KTTNGARIKT VPGGTGYAKR ITFEKIKLIQ 300 TRNPIILDQF YHSVHLTTGV VQVSEVTYRG FQGTSANDKA INLDCGPSGL NL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-73 | 59 | 346 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-76 | 21 | 345 | 341 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-80 | 34 | 348 | 330 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-94 | 30 | 345 | 325 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-100 | 32 | 345 | 321 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 2 | 348 | 1 | 354 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 349 | 1 | 354 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002266543.1 | 0 | 33 | 345 | 21 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 14 | 349 | 8 | 353 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 10 | 349 | 4 | 350 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-25 | 113 | 338 | 61 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-25 | 113 | 338 | 61 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-25 | 113 | 338 | 61 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-25 | 113 | 338 | 61 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-25 | 113 | 338 | 61 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |