Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G190600.3 |
Family | GH28 |
Protein Properties | Length: 431 Molecular Weight: 47031.9 Isoelectric Point: 5.7895 |
Chromosome | Chromosome/Scaffold: 02 Start: 15078660 End: 15081012 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 382 | 0 |
WDAACNQVDPAVILVPYGFDFMIQSTIFSGPCKDGLVFQVDGTLMPPDGPDSWPQKNSRRQWLVFYRINEMSLQGGGVIYGRGEKWWDLPCKPHKGINGT TMPGPCDSPTAIRFFMSSNLTIHGLKIKNSPQFNLRFDNCKNVHVESIHITAPALSPNTDGIHIENTNGVGIYNSVISNGDDCVSIGSGCFDVDIENITC GPSHGISIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQGGSGAVSGITFSNIHMDNVRNPIIIDQFYCLTKSDSLPCTNITLSDVE |
Full Sequence |
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Protein Sequence Length: 431 Download |
MEHSRLSLLE FGISFICFFL CTQARWHNHT KHHKHNKNHR SSTISEPPTP PPEPADPSDG 60 SGYNSSGVFD VRNFGAIGDG IIDDTDAFKM AWDAACNQVD PAVILVPYGF DFMIQSTIFS 120 GPCKDGLVFQ VDGTLMPPDG PDSWPQKNSR RQWLVFYRIN EMSLQGGGVI YGRGEKWWDL 180 PCKPHKGING TTMPGPCDSP TAIRFFMSSN LTIHGLKIKN SPQFNLRFDN CKNVHVESIH 240 ITAPALSPNT DGIHIENTNG VGIYNSVISN GDDCVSIGSG CFDVDIENIT CGPSHGISIG 300 SLGNHNSRAC VSNITVRDSV IRVSDNGVRI KTWQGGSGAV SGITFSNIHM DNVRNPIIID 360 QFYCLTKSDS LPCTNITLSD VELLPAEGYS VLDPYCWNAY GDSQTLTIPP VSCLMEGIPG 420 SILNNDMHYC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-68 | 63 | 410 | 387 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-69 | 63 | 414 | 391 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-83 | 96 | 381 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-84 | 71 | 375 | 308 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-102 | 65 | 410 | 381 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 60 | 430 | 80 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 60 | 430 | 61 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 1 | 430 | 1 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 60 | 430 | 35 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 1 | 430 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-24 | 127 | 388 | 36 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-24 | 127 | 388 | 36 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-24 | 127 | 388 | 36 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-24 | 127 | 388 | 36 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-24 | 127 | 388 | 36 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |