Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G188300.1 |
Family | GH28 |
Protein Properties | Length: 469 Molecular Weight: 51077.3 Isoelectric Point: 8.3853 |
Chromosome | Chromosome/Scaffold: 08 Start: 13019788 End: 13022935 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 106 | 429 | 0 |
KAACKVSGAVVEIPAEFKFLIKPITLQGPCMPHLVLEVDGILLAPPQVGAWPKSGLFQWLNFKWVHDFTIQGTGKLDGQGSAWWSPSGVYYIQALRFYDS HNVTVRDIKIMNSPQCHLKFDSSSGIKVNNITIDSPENSPNTDGIHLQNTKDVEIQHSNIGCGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSV ACVSDIVVEKISLQNTLSGVRIKTWQGGVGSVKNVTFSSIEVSDVKYPVIIDQFYCDKKICKNQTEAVAISGVKYDRIIGSYSVQPLHLACSNDVPCTDV DLIDIQLKPSSNGFRGFRQALCWN |
Full Sequence |
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Protein Sequence Length: 469 Download |
MKSIRNSSVR FFLFVVVAVF ITFAMISVEA RKHHSNRNKP HKHLKDKGSN GHNAPDPATN 60 SPGPAPAPLP YYGSYPTHSI IFDVLSFGAK GDGVSDDSKA LLAAWKAACK VSGAVVEIPA 120 EFKFLIKPIT LQGPCMPHLV LEVDGILLAP PQVGAWPKSG LFQWLNFKWV HDFTIQGTGK 180 LDGQGSAWWS PSGVYYIQAL RFYDSHNVTV RDIKIMNSPQ CHLKFDSSSG IKVNNITIDS 240 PENSPNTDGI HLQNTKDVEI QHSNIGCGDD CVSIQTGCSN IHVHHINCGP GHGISLGGLG 300 KDKSVACVSD IVVEKISLQN TLSGVRIKTW QGGVGSVKNV TFSSIEVSDV KYPVIIDQFY 360 CDKKICKNQT EAVAISGVKY DRIIGSYSVQ PLHLACSNDV PCTDVDLIDI QLKPSSNGFR 420 GFRQALCWNS YGKSQAPLLP SSIDYCLRTE SRSVKRIARS HTEHICPP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-65 | 84 | 440 | 369 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-65 | 77 | 434 | 364 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-66 | 81 | 434 | 361 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-67 | 114 | 412 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-81 | 81 | 461 | 392 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 467 | 29 | 469 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 466 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 1 | 468 | 1 | 468 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 82 | 454 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 466 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 175 | 364 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-23 | 83 | 448 | 22 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 7e-22 | 181 | 398 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-22 | 181 | 398 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-22 | 181 | 398 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |