Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H02537.1 |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 43801 Isoelectric Point: 8.2412 |
Chromosome | Chromosome/Scaffold: 8 Start: 35164691 End: 35170226 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 39 | 373 | 0 |
KAACQVPSATLVIPQGLKFLVKPISFKGPCMPNLVLQIDGIVQAPPKVGSWKKSSLFQWLNFKWVQNFTVQGTGTVDGQGSEWWSLSQMLPYNSTSKHVL GMKPTALRFYSSCNVSVRGISIVNSPLCHLKFDNSRGIKISNIAISSPKDSPNTDGIHLQNSQHVEIEHSNIGCGDDCISVQTGCSDVYIHHINCGPGHG ISLGGLGKDKSVACVSNIIVDNLSLESTLYGVRIKTWQGGLGSVKNVSFSNVQVSNVKVPMMIDQYYCDKKFCKNQTGGIAISRVKFNQFVGTYAAQPLH IACSQDVPCTNVDLVDIQLKPLPGLGGSREALCYN |
Full Sequence |
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Protein Sequence Length: 409 Download |
SAPHYGDLPA ESSMFNVLSF GAKGDGVSDD SKAFSAAWKA ACQVPSATLV IPQGLKFLVK 60 PISFKGPCMP NLVLQIDGIV QAPPKVGSWK KSSLFQWLNF KWVQNFTVQG TGTVDGQGSE 120 WWSLSQMLPY NSTSKHVLGM KPTALRFYSS CNVSVRGISI VNSPLCHLKF DNSRGIKISN 180 IAISSPKDSP NTDGIHLQNS QHVEIEHSNI GCGDDCISVQ TGCSDVYIHH INCGPGHGIS 240 LGGLGKDKSV ACVSNIIVDN LSLESTLYGV RIKTWQGGLG SVKNVSFSNV QVSNVKVPMM 300 IDQYYCDKKF CKNQTGGIAI SRVKFNQFVG TYAAQPLHIA CSQDVPCTNV DLVDIQLKPL 360 PGLGGSREAL CYNSYGKAVA PLVPASIDDC LRSDGGSRIA RSHDVVCQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-59 | 15 | 357 | 348 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-60 | 12 | 376 | 372 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 8.0e-61 | 13 | 374 | 366 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-61 | 10 | 384 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 6.0e-85 | 9 | 396 | 391 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 14 | 407 | 66 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 9 | 408 | 76 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 3 | 403 | 70 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 15 | 397 | 1 | 377 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 3 | 407 | 70 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-26 | 105 | 309 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-18 | 16 | 377 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 2e-18 | 113 | 373 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-18 | 113 | 373 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-18 | 113 | 373 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO844129 | 333 | 22 | 347 | 0 |
GO008428 | 230 | 36 | 264 | 0 |
ES800057 | 327 | 57 | 358 | 0 |
EH771487 | 229 | 5 | 233 | 0 |
EH768189 | 255 | 60 | 314 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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