Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G044000.1 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51238.3 Isoelectric Point: 7.9086 |
Chromosome | Chromosome/Scaffold: 10 Start: 7468787 End: 7471971 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 106 | 434 | 0 |
KAACQVSGAIVEIPAEFKFLIKPIILQGPCMPHLVLEIDGILLSPPRVGAWPKSSLFQWINFKWVHDFTIQGTGKVDGQGSDWWSPSEVYYIQVCQCRAL RFYDSHNVTVRDIEIVNSPQCHLKFDSSSGIKVDNITINSPEMSPNTDGIHLQNTKDVEIQHSNIGCGDDCVSIQTGCSNIHVHDINCGPGHGISVGGLG KDKSVACVSDIVVEKISLQNTLSGVRIKTWQGGIGSVKNVTFSNIEVSDVKYPVIIDQFYCDKKTCKNQTDAVAISGVKYDSIKGSYSVQPIHLACSNDV PCTGVDLIDIQLKPSSNGYGGFRQALCWN |
Full Sequence |
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Protein Sequence Length: 472 Download |
MKSTKHSSVR FFLFVGVAIF ITFAIISVEA RKHHNNRHKP HKHLKDKGGN GHKAPDPATN 60 IPGPAPAPLP HYGSYPTNSN IFDVLSFGAK GDGVSDDSKA LLAAWKAACQ VSGAIVEIPA 120 EFKFLIKPII LQGPCMPHLV LEIDGILLSP PRVGAWPKSS LFQWINFKWV HDFTIQGTGK 180 VDGQGSDWWS PSEVYYIQVC QCRALRFYDS HNVTVRDIEI VNSPQCHLKF DSSSGIKVDN 240 ITINSPEMSP NTDGIHLQNT KDVEIQHSNI GCGDDCVSIQ TGCSNIHVHD INCGPGHGIS 300 VGGLGKDKSV ACVSDIVVEK ISLQNTLSGV RIKTWQGGIG SVKNVTFSNI EVSDVKYPVI 360 IDQFYCDKKT CKNQTDAVAI SGVKYDSIKG SYSVQPIHLA CSNDVPCTGV DLIDIQLKPS 420 SNGYGGFRQA LCWNSYGKSQ APLVPSSIDY CLRTESGSVK GTARSRHEHI C* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-77 | 78 | 421 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-81 | 77 | 439 | 369 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 9.0e-84 | 78 | 439 | 369 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-85 | 84 | 445 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-104 | 69 | 465 | 413 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 453 | 29 | 448 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 471 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 1 | 471 | 1 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 82 | 459 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 471 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 175 | 369 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-22 | 83 | 453 | 22 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 3e-19 | 107 | 403 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-19 | 107 | 403 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-19 | 107 | 403 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |