Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a018728m |
Family | GH28 |
Protein Properties | Length: 431 Molecular Weight: 44608.2 Isoelectric Point: 8.1567 |
Chromosome | Chromosome/Scaffold: 109 Start: 407003 End: 408942 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 393 | 0 |
DACKVQGSIMLVPSGSVFLVKPISFSGPNCMSNIVFQLEGKIIAPTNSGAWGSGLLQWLEFTKLKGITIRGKGIIDGQGSIWWKLTTNSAVESESSYLPN SINTEANGGMPSTKPTALRFYGSTDVTVTGITIQNSPQTHLKFDGCTGVQVSGVSISSPGNSPNTDGIHLQNSQNVVIQATTLACGDDCISIQTGCSNIY VRNVNCGPGHGISIGGLGKDGTKACVSNVTVRDSIIQNTLNGIRIKSWQGGSGSVKGVLFVNIQVSEVENPIIIDQYYCDGHNNCPNKTSAVAISGVSYQ SIKGTYTANPVHLACSDSIPCAGITLSTIALNPSTKGVKNNNNNPYC |
Full Sequence |
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Protein Sequence Length: 431 Download |
KSGGGGTINA SINAISTAGG TFNVLKYGAK GDGIADDTNA FGGAWADACK VQGSIMLVPS 60 GSVFLVKPIS FSGPNCMSNI VFQLEGKIIA PTNSGAWGSG LLQWLEFTKL KGITIRGKGI 120 IDGQGSIWWK LTTNSAVESE SSYLPNSINT EANGGMPSTK PTALRFYGST DVTVTGITIQ 180 NSPQTHLKFD GCTGVQVSGV SISSPGNSPN TDGIHLQNSQ NVVIQATTLA CGDDCISIQT 240 GCSNIYVRNV NCGPGHGISI GGLGKDGTKA CVSNVTVRDS IIQNTLNGIR IKSWQGGSGS 300 VKGVLFVNIQ VSEVENPIII DQYYCDGHNN CPNKTSAVAI SGVSYQSIKG TYTANPVHLA 360 CSDSIPCAGI TLSTIALNPS TKGVKNNNNN PYCWRAFGEI QTATTPPVSC LQKGGPPNNK 420 RPDAISGYVC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-67 | 15 | 383 | 374 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-69 | 54 | 393 | 343 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 5.0e-69 | 19 | 375 | 361 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-73 | 10 | 388 | 384 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-92 | 22 | 407 | 390 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 21 | 416 | 45 | 430 | polygalacturonase PG1 [Glycine max] |
GenBank | AAD46484.1 | 0 | 21 | 416 | 41 | 426 | polygalacturonase PG2 [Glycine max] |
GenBank | ACU24545.1 | 0 | 21 | 416 | 45 | 430 | unknown [Glycine max] |
EMBL | CBI34901.1 | 0 | 17 | 420 | 68 | 475 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002521450.1 | 0 | 20 | 414 | 75 | 456 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 115 | 324 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-21 | 113 | 377 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-21 | 113 | 377 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-21 | 113 | 377 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-21 | 113 | 377 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO999084 | 223 | 1 | 223 | 0 |
ES800057 | 382 | 63 | 427 | 0 |
GO844129 | 339 | 29 | 367 | 0 |
EX073104 | 284 | 54 | 326 | 0 |
EV525679 | 270 | 145 | 414 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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