Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G152000.2 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42415.7 Isoelectric Point: 4.3211 |
Chromosome | Chromosome/Scaffold: 10 Start: 15998405 End: 16001282 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 25 | 350 | 0 |
CGVESGVILAPSGYSFMITSTIFSGPCKPGIVFQVDGCLMPPDGPDSWPEKDSTQQWLVFYRLDGMTLTGEGTIEGNGEKWWDLPCKPHRGPNGSTSKGP CVSPALIRFFMSSNLEVSGLKIQNSPQFHMKFDGCEGVLIKKLSISSPKLSPNTDGIHIENTKAVGIYDSFISNGDDCISIGTGCSNVDIDGLTCGPSHG ISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTWQGGTGCVSDINFENIQMENVRNCIIIDQYYCLSKACQNETSAVYVTGVTYRNIKGTYDVRTPP IHFACSDTVACTNILLSEVELLPEEG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MDYGAVGDGS TDDTNAFRQA WKEACGVESG VILAPSGYSF MITSTIFSGP CKPGIVFQVD 60 GCLMPPDGPD SWPEKDSTQQ WLVFYRLDGM TLTGEGTIEG NGEKWWDLPC KPHRGPNGST 120 SKGPCVSPAL IRFFMSSNLE VSGLKIQNSP QFHMKFDGCE GVLIKKLSIS SPKLSPNTDG 180 IHIENTKAVG IYDSFISNGD DCISIGTGCS NVDIDGLTCG PSHGISIGSL GVHNSQACVS 240 NITVRNTIIK ESDDGLRIKT WQGGTGCVSD INFENIQMEN VRNCIIIDQY YCLSKACQNE 300 TSAVYVTGVT YRNIKGTYDV RTPPIHFACS DTVACTNILL SEVELLPEEG ELVDDPFCWN 360 AYGTEETVTI PPINCLREGE PEGLREISSY GC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-66 | 1 | 338 | 342 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-67 | 3 | 376 | 381 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-79 | 31 | 338 | 308 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-85 | 2 | 338 | 341 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-97 | 2 | 372 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 3 | 392 | 85 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
EMBL | CBI25976.1 | 0 | 19 | 392 | 2 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263668.1 | 0 | 3 | 392 | 88 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 392 | 91 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 3 | 392 | 91 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-23 | 59 | 345 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-23 | 59 | 345 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-23 | 59 | 345 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-23 | 59 | 345 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-23 | 59 | 345 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 327 | 5 | 331 | 0 |
DY277859 | 329 | 2 | 330 | 0 |
DV135481 | 289 | 7 | 293 | 0 |
CX663441 | 286 | 108 | 393 | 0 |
ES849368 | 295 | 44 | 336 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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