Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10029140 |
Family | GH28 |
Protein Properties | Length: 531 Molecular Weight: 57693.6 Isoelectric Point: 8.444 |
Chromosome | Chromosome/Scaffold: 376 Start: 734576 End: 737088 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 138 | 483 | 0 |
AACKVEKSVMFVPEGYQFLVGPISFAGPYCQKSITFQVSKLLLAQANSYVWGKGLLQWLEFSKLAQITIQGKGTIDGSGSVWWQDSPLSEPEDNLSHQII LLNNNTLEKHPPMPVRSELSSKMPSQKPTALRFYGSLNVTVTGITIQNSPQCHLKFDNCIGVMVHHISVSSPGDSPNTDGVHLQNSRDVLIHSSSLACGD DCISIQTGCTNVYIHDVNCGPGHGISIGSLGKDNTRACVSNVTVKNVNMHNTMTGVRIKTWQGGSGSVYGIMFSNIQVSEVQFPIVIDQFYCDKSTCKNQ SSAVGVSGINYERIKGTYTVKPVHFACSDSQPCADISLANIELKPI |
Full Sequence |
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Protein Sequence Length: 531 Download |
MRGLSFRSFT FMVLIAFLVW SLSIDTCIAR SSRHWRHHRG SAASFMKKKG KSHGSSNHHN 60 NNHNGGGSLK PPKKAPNPPL PTPPAPIQPP KQVPAASPPP PSSTGPQKDS LTFNVLDFGA 120 KGDGKCDDTK AFQATWAAAC KVEKSVMFVP EGYQFLVGPI SFAGPYCQKS ITFQVSKLLL 180 AQANSYVWGK GLLQWLEFSK LAQITIQGKG TIDGSGSVWW QDSPLSEPED NLSHQIILLN 240 NNTLEKHPPM PVRSELSSKM PSQKPTALRF YGSLNVTVTG ITIQNSPQCH LKFDNCIGVM 300 VHHISVSSPG DSPNTDGVHL QNSRDVLIHS SSLACGDDCI SIQTGCTNVY IHDVNCGPGH 360 GISIGSLGKD NTRACVSNVT VKNVNMHNTM TGVRIKTWQG GSGSVYGIMF SNIQVSEVQF 420 PIVIDQFYCD KSTCKNQSSA VGVSGINYER IKGTYTVKPV HFACSDSQPC ADISLANIEL 480 KPIQEKYRMY DPYCWETFGE LNTPTVPPIG CLQIGKPSSN HPHQTDHDTC * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-74 | 110 | 481 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 6.0e-75 | 113 | 480 | 373 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-78 | 144 | 480 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-89 | 112 | 481 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-100 | 113 | 508 | 401 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 530 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 2 | 530 | 5 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 530 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 530 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 530 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-24 | 126 | 431 | 36 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-18 | 278 | 454 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-18 | 278 | 454 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-18 | 278 | 454 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-18 | 278 | 454 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |