Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10040604 |
Family | GH28 |
Protein Properties | Length: 344 Molecular Weight: 37053.5 Isoelectric Point: 6.601 |
Chromosome | Chromosome/Scaffold: 156 Start: 635523 End: 637017 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 328 | 0 |
MPTLIDGQGQIWWDHCKRNLDCDRPTALSFHSCNNLVLNSLHHVNSQRNHIGICGSHGVDMSHLMITAPENSPNTDGIDIATSSNLNIHDSFIGTGDDCI AINGFTSHVNISSVMCGPGHGISIGSLGKNGIYETVEDVHVRDCTFKGTTNGARIKTWKGGRGYVRKVSFDDITLVNAENPVIIDQEYFSENAPPSRDHV EITDIRFSGVRGTTPSEKAVDINCVGGSGCKAIVVEGMDIKSAVHGEQLVAVCNNVHG |
Full Sequence |
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Protein Sequence Length: 344 Download |
MEMEEMKQAG QVGRRFCSGI RVGYGPPKTL PGPEPNGHRV HPNPVVYSVN QQITGQTGPD 60 PGGYPDFRFQ MPTLIDGQGQ IWWDHCKRNL DCDRPTALSF HSCNNLVLNS LHHVNSQRNH 120 IGICGSHGVD MSHLMITAPE NSPNTDGIDI ATSSNLNIHD SFIGTGDDCI AINGFTSHVN 180 ISSVMCGPGH GISIGSLGKN GIYETVEDVH VRDCTFKGTT NGARIKTWKG GRGYVRKVSF 240 DDITLVNAEN PVIIDQEYFS ENAPPSRDHV EITDIRFSGV RGTTPSEKAV DINCVGGSGC 300 KAIVVEGMDI KSAVHGEQLV AVCNNVHGVS RDNSSPKVSC LRP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-60 | 75 | 336 | 268 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-61 | 75 | 326 | 261 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-66 | 75 | 327 | 258 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 4.0e-71 | 118 | 333 | 218 | + polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-72 | 75 | 341 | 273 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36307.1 | 0 | 75 | 342 | 132 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 75 | 342 | 120 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 74 | 341 | 130 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332134.1 | 0 | 80 | 341 | 110 | 360 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 75 | 341 | 129 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 72 | 273 | 116 | 329 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 8e-21 | 75 | 298 | 84 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 8e-21 | 75 | 298 | 84 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 8e-21 | 75 | 298 | 84 | 310 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 9e-20 | 63 | 326 | 66 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY474520 | 255 | 89 | 341 | 0 |
GT141262 | 224 | 118 | 341 | 0 |
GO013888 | 205 | 136 | 340 | 0 |
CV536748 | 220 | 75 | 294 | 0 |
GO025017 | 207 | 136 | 341 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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