Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 479028 |
Family | GH28 |
Protein Properties | Length: 455 Molecular Weight: 48681 Isoelectric Point: 4.9788 |
Chromosome | Chromosome/Scaffold: 3 Start: 6618006 End: 6620220 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 47 | 377 | 0 |
WEAVCSGTGDGQLVVPAGVTFMLQPLKFQGSCKSAPIFVQILGNLVASSKGNWKGDKDQWILFTDIEGLVIEGGGEINGQGSSWWEHKGSRPTALKFKSC NNLRLSGLTHVDSPMAHIHINDCNYVTISSLRINAPESSPNTDGIDVGSSSNVVIQDCVIGTGDDCIAINSGTSNIRISGIDCGPGHGISIGSLGKDGET ATVENVCVQNCNFRGTTNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQLYNGGDSDKAKDHKSSAVEVSKVVYSNFIGTSKSEYGVDFRCSETVP CTEIFLRDVKIETASSGSGQVAQGQCLNVRG |
Full Sequence |
---|
Protein Sequence Length: 455 Download |
MKKKTWFLNF SLFILQIFTF SNALDVTQLG AIGDGVTDDS QAFLKAWEAV CSGTGDGQLV 60 VPAGVTFMLQ PLKFQGSCKS APIFVQILGN LVASSKGNWK GDKDQWILFT DIEGLVIEGG 120 GEINGQGSSW WEHKGSRPTA LKFKSCNNLR LSGLTHVDSP MAHIHINDCN YVTISSLRIN 180 APESSPNTDG IDVGSSSNVV IQDCVIGTGD DCIAINSGTS NIRISGIDCG PGHGISIGSL 240 GKDGETATVE NVCVQNCNFR GTTNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQL 300 YNGGDSDKAK DHKSSAVEVS KVVYSNFIGT SKSEYGVDFR CSETVPCTEI FLRDVKIETA 360 SSGSGQVAQG QCLNVRGVST LAVPGLECLA LSPDMLSSTQ LPEQTCMLAQ SVQPRTTQPM 420 QDPIWDFESR GKRLRVYNAV LVSFVSLVTY ILGD* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-84 | 51 | 375 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-88 | 24 | 358 | 346 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-93 | 24 | 392 | 380 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 4.0e-113 | 7 | 380 | 377 | + polygalacturonase | ||
PLN03003 | PLN03003 | 0 | 1 | 454 | 456 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC75354.1 | 0 | 12 | 389 | 4 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_001078162.1 | 0 | 3 | 453 | 2 | 451 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566524.1 | 0 | 1 | 453 | 1 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002266543.1 | 0 | 25 | 389 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515526.1 | 0 | 24 | 390 | 28 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |