Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr8g077320.1 |
Family | GH28 |
Protein Properties | Length: 374 Molecular Weight: 40375.8 Isoelectric Point: 8.8059 |
Chromosome | Chromosome/Scaffold: 8 Start: 21363215 End: 21368072 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 362 | 0 |
TCGAEGTSTLVIPPKKLYFVNNLEFRGACKATSILIQIQYVNGLTIDGTRRGRINGHGSTWWQCKSCPRPRILSFYACNDLSVRNVRITNSPGAHGTING CNRAKISNLDVQSPSHSPNTDGFDISSSKNILIEDSTIRTGDDCIAINGGSSYISVSRFRAVKTGGSALTGFSSTRVRVACGPGHGISIGSLGKGNSYET VEEVNVPNCSFTNTTNGARIKTFPGGSGYAKKITFEQIQLTNVKNTIIIDQHYGGKVATESYAGDLAINLDCMSCFNVVLDQVYIFSSQEKKEFHSFCKN FHGT |
Full Sequence |
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Protein Sequence Length: 374 Download |
MQVLISCVLI LGFASPCLCG RWINVAKTNN NIFNVIAYGA RGDGISDDTQ AFLRAWNHTC 60 GAEGTSTLVI PPKKLYFVNN LEFRGACKAT SILIQIQYVN GLTIDGTRRG RINGHGSTWW 120 QCKSCPRPRI LSFYACNDLS VRNVRITNSP GAHGTINGCN RAKISNLDVQ SPSHSPNTDG 180 FDISSSKNIL IEDSTIRTGD DCIAINGGSS YISVSRFRAV KTGGSALTGF SSTRVRVACG 240 PGHGISIGSL GKGNSYETVE EVNVPNCSFT NTTNGARIKT FPGGSGYAKK ITFEQIQLTN 300 VKNTIIIDQH YGGKVATESY AGDLAINLDC MSCFNVVLDQ VYIFSSQEKK EFHSFCKNFH 360 GTIGSTIPRV YCK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-62 | 3 | 369 | 418 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-69 | 34 | 343 | 361 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-71 | 32 | 368 | 391 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-79 | 28 | 313 | 308 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 7.0e-80 | 29 | 343 | 362 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 372 | 1 | 395 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 372 | 1 | 393 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36306.1 | 0 | 33 | 372 | 124 | 492 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 33 | 372 | 18 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 32 | 372 | 26 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-22 | 102 | 311 | 70 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-22 | 102 | 311 | 70 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-22 | 102 | 311 | 70 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-22 | 102 | 311 | 70 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-22 | 102 | 311 | 70 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |