Basic Information | |
---|---|
Species | Carica papaya |
Cazyme ID | evm.model.supercontig_37.67 |
Family | GH28 |
Protein Properties | Length: 416 Molecular Weight: 44988 Isoelectric Point: 4.334 |
Chromosome | Chromosome/Scaffold: 37 Start: 498101 End: 500754 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 55 | 397 | 0 |
TCNFSESSPTMHIPEGHEFLLQPLTFSGPCKSNNITFLVDGKIIAPSEPHDWKCGGDGESCEEWIVFENLDGIIISGAGTIAGQGSNWWPLSCDDDKLAC HKKPTALVISKSNNVRLNGLSFEDNPQVHISLEGSTGVFVSYLTIKAPGDSPNTDGIHIQSSTNIFVSNSLISTGDDCISIGSGTSNVNISDITCGPGHG ISIGSLSKNGDYETVEYIYVKDIVFKGTSNGCRIKTWQGGKGYARYITFEHIESQDATRPIVIDQYYCPDKQCKNETSAVNIDNVIYSDVHGTSNKKDAV HLACSETTPCTNIIMDDIKLKLTTKDKNGENNEAESYCLNVEG |
Full Sequence |
---|
Protein Sequence Length: 416 Download |
MDNLYKIWFV VLASQCMLLA GQETETTVFD VQSYGATGDG YSDDTQAFED AWKATCNFSE 60 SSPTMHIPEG HEFLLQPLTF SGPCKSNNIT FLVDGKIIAP SEPHDWKCGG DGESCEEWIV 120 FENLDGIIIS GAGTIAGQGS NWWPLSCDDD KLACHKKPTA LVISKSNNVR LNGLSFEDNP 180 QVHISLEGST GVFVSYLTIK APGDSPNTDG IHIQSSTNIF VSNSLISTGD DCISIGSGTS 240 NVNISDITCG PGHGISIGSL SKNGDYETVE YIYVKDIVFK GTSNGCRIKT WQGGKGYARY 300 ITFEHIESQD ATRPIVIDQY YCPDKQCKNE TSAVNIDNVI YSDVHGTSNK KDAVHLACSE 360 TTPCTNIIMD DIKLKLTTKD KNGENNEAES YCLNVEGVTN GNVIPQVSCL TEVSP* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-82 | 26 | 405 | 385 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-87 | 29 | 402 | 375 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-88 | 20 | 408 | 392 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-94 | 6 | 415 | 415 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 5.0e-99 | 28 | 405 | 380 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK26513.1 | 0 | 23 | 407 | 39 | 422 | unknown [Picea sitchensis] |
DDBJ | BAB10216.1 | 0 | 25 | 410 | 32 | 406 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 1 | 410 | 1 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267133.1 | 0 | 25 | 410 | 22 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 1 | 410 | 1 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-25 | 111 | 374 | 95 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-17 | 127 | 360 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-17 | 127 | 360 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-17 | 127 | 360 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-17 | 127 | 360 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EV566469 | 272 | 77 | 348 | 0 |
DR050772 | 291 | 89 | 369 | 0 |
EV571593 | 231 | 184 | 410 | 0 |
DY281549 | 322 | 29 | 348 | 0 |
DW479564 | 324 | 36 | 352 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|