Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_003_00408.2 |
Family | GH28 |
Protein Properties | Length: 343 Molecular Weight: 37523.5 Isoelectric Point: 5.5162 |
Chromosome | Chromosome/Scaffold: 3 Start: 5740984 End: 5743356 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 103 | 307 | 0 |
EACAVESAILLAPADYQFTITSTIFSGPCKPGLVFQLDGVLMPPNGPDCWPEGDSKKQWLIFYRVDNMTLTGSGTIEGNGEQWWELPCKPHRGPNGMTLP GPCDSPALIRFFISSNVEVTGLRIQNSPQFHMKFDGCTGVLIQDISIDSPALSPNTDGIHIQDTKGVGIYNSMITNGDDCVSIGPGCSEVAIENITCQHG HGIRM |
Full Sequence |
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Protein Sequence Length: 343 Download |
MEIVRWFSFI CVVIATFVLL DLSNNVDGRA HFHKKKTDHT HTKKGSPVSP SPPEYLSPAA 60 PTIPSDPYNN PNPDPCVFDV TSYGAVGDGS SDDTEAFTSA WKEACAVESA ILLAPADYQF 120 TITSTIFSGP CKPGLVFQLD GVLMPPNGPD CWPEGDSKKQ WLIFYRVDNM TLTGSGTIEG 180 NGEQWWELPC KPHRGPNGMT LPGPCDSPAL IRFFISSNVE VTGLRIQNSP QFHMKFDGCT 240 GVLIQDISID SPALSPNTDG IHIQDTKGVG IYNSMITNGD DCVSIGPGCS EVAIENITCQ 300 HGHGIRMRTL IYFLQHWEPR SASFTGLRLK HLCQQCVYKE LR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-41 | 78 | 310 | 234 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 9.0e-42 | 78 | 310 | 238 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-47 | 120 | 310 | 191 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-51 | 80 | 310 | 235 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-58 | 77 | 310 | 236 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC87913.1 | 0 | 1 | 310 | 1 | 327 | polygalacturonase precursor [Glycine max] |
GenBank | ABC87915.1 | 0 | 1 | 310 | 1 | 327 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002263668.1 | 0 | 19 | 310 | 17 | 315 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 310 | 1 | 320 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 310 | 1 | 318 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000001 | 169 | 307 | 110 | 255 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000002 | 159 | 340 | 56 | 237 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000002 | 159 | 340 | 56 | 237 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000002 | 159 | 340 | 56 | 237 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000002 | 159 | 340 | 56 | 237 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |