Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g103410.1 |
Family | GH28 |
Protein Properties | Length: 452 Molecular Weight: 49861.2 Isoelectric Point: 9.4989 |
Chromosome | Chromosome/Scaffold: 2 Start: 33605309 End: 33608674 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 418 | 0 |
ACSLSGFINIVFPYQKTFLVTPIDIGGPCRSKITLRILGAIVAPRNPDVWHGLNKRKWIYFHGVNHLSVEGGGRIDGMGQEWWSRSCKINTTNPCLPAPT ALTFHKCKSLKVRNLTVLNSQKMHIAFTSCMRVVASRLKVLAPASSPNTDGIHISATKGVEIRDSLIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGS LGKSNVWEKIQNVIVDGAYLYNTDNGVRIKTWQGGSGFASKITFQNILMENVSNPIIIDQYYCDSRHPCKNQTSAVQVGNISFINIQGTSATEETIKFAC SDASPCEGLYLENIFLRSYFGGNTRSYCWQAHGS |
Full Sequence |
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Protein Sequence Length: 452 Download |
MRSCSFISIY IIVIIIIVTP LLIYHAQAQS QSQGIDSIIQ LPRSGSSRTR TRTRSRRFLS 60 IADFGARGDG FHNDTQAFLK VWEIACSLSG FINIVFPYQK TFLVTPIDIG GPCRSKITLR 120 ILGAIVAPRN PDVWHGLNKR KWIYFHGVNH LSVEGGGRID GMGQEWWSRS CKINTTNPCL 180 PAPTALTFHK CKSLKVRNLT VLNSQKMHIA FTSCMRVVAS RLKVLAPASS PNTDGIHISA 240 TKGVEIRDSL IRTGDDCISI VRNSSRVWIR NISCGPGHGI SIGSLGKSNV WEKIQNVIVD 300 GAYLYNTDNG VRIKTWQGGS GFASKITFQN ILMENVSNPI IIDQYYCDSR HPCKNQTSAV 360 QVGNISFINI QGTSATEETI KFACSDASPC EGLYLENIFL RSYFGGNTRS YCWQAHGSAQ 420 GYVYPPVCFS TSSDLIRQNV LLEPNPAINS V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-92 | 64 | 428 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-93 | 59 | 443 | 391 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-99 | 86 | 412 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-125 | 59 | 425 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 59 | 440 | 382 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 29 | 451 | 29 | 451 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 1 | 438 | 4 | 434 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 1 | 438 | 7 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 33 | 440 | 28 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 35 | 443 | 12 | 419 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-24 | 155 | 346 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-19 | 140 | 379 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-19 | 140 | 379 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-19 | 140 | 379 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-19 | 140 | 379 | 56 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |