Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G139100.2 |
Family | GH35 |
Protein Properties | Length: 766 Molecular Weight: 85132.3 Isoelectric Point: 6.0186 |
Chromosome | Chromosome/Scaffold: 06 Start: 11623614 End: 11629249 |
Description | beta-galactosidase 7 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 1 | 281 | 0 |
MWSDLIQKAKEGGLDTIETYIFWNAHERRRREYNFTGNLDFVKFFQKVQEAGLYGILRIGPYACAEWNYGGFPVWLHNIPEIKFRTDNEIFKNEMQTFTT KIVNMAKEAKLFASQGGPIILAQIENEYGNVMGPYGEAGKSYVQWCAQMAVAQNIGVPWIMCQQSDAPSSVINTCNGFYCDTFTPNSPKSPKMWTENWTG WYKKWGQKDPHRTAEDLAFSVARFFQYNGVLQNYYMYYGGTNFGRTSGGPFIATSYDYDAPLDEYGNLNQPKWGHLKNLHA |
Full Sequence |
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Protein Sequence Length: 766 Download |
MWSDLIQKAK EGGLDTIETY IFWNAHERRR REYNFTGNLD FVKFFQKVQE AGLYGILRIG 60 PYACAEWNYG GFPVWLHNIP EIKFRTDNEI FKNEMQTFTT KIVNMAKEAK LFASQGGPII 120 LAQIENEYGN VMGPYGEAGK SYVQWCAQMA VAQNIGVPWI MCQQSDAPSS VINTCNGFYC 180 DTFTPNSPKS PKMWTENWTG WYKKWGQKDP HRTAEDLAFS VARFFQYNGV LQNYYMYYGG 240 TNFGRTSGGP FIATSYDYDA PLDEYGNLNQ PKWGHLKNLH AALKLGEKIL TNSTVKTTKY 300 SDGWVELTTY TSNIDGERLC FLSNTKMDGL DVDLQQDGKY FVPAWSVSIL QDCNKETYNT 360 AKVNVQTSLI VKKLHENDTP LKLSWEWAPE PTKAPLHGQG GFKATQLLEQ KAATYDESDY 420 LWYMTSVDNN GTASKNVTLR VKYSGQFLHA FVNGKEIGSQ HGYTFTFEKP ALLKPGTNII 480 SLLSATVGLQ NYGEFFDEGP EGIAGGPVEL IDSGNTTTDL SSNEWSYKVG LNGEGGRFYD 540 PTSGRAKWVS GNLRVGRAMT WYKTTFQAPS GTEPVVVDLQ GMGKGHAWVN GNSLGRFWPI 600 LTADPNGCDG KCDYRGQYKE GKCLSNCGNP TQRWYHVPRS FLNNGSNTLI LFEEIGGNPS 660 DVSFQITATE TICGNTYEGT TLELSCNGGR RIISDIQYAS FGDPQGSSCG SFQRGSVEAS 720 RSFSAVEKAC MGKESCSINV SKATFGVEDS FGVDNNRLVV QAVCT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13364 | BetaGal_dom4_5 | 0.0004 | 387 | 489 | 109 | + Beta-galactosidase jelly roll domain. This domain is found in beta galactosidase enzymes. It has a jelly roll fold. | ||
pfam02140 | Gal_Lectin | 1.0e-12 | 684 | 746 | 66 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 2.0e-17 | 1 | 273 | 332 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 6.0e-145 | 1 | 283 | 298 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 1 | 765 | 797 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27773.1 | 0 | 1 | 764 | 70 | 835 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276918.1 | 0 | 1 | 764 | 1 | 766 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324727.1 | 0 | 1 | 729 | 1 | 745 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326135.1 | 0 | 1 | 765 | 60 | 824 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516256.1 | 0 | 1 | 764 | 77 | 848 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 3e-40 | 2 | 279 | 39 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 2e-34 | 2 | 364 | 42 | 414 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 2e-34 | 2 | 364 | 42 | 414 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 683 | 1 | 671 | 0 |
HO780602 | 662 | 21 | 664 | 0 |
DY264749 | 364 | 120 | 482 | 0 |
FC915116 | 315 | 120 | 433 | 0 |
HO795552 | 533 | 61 | 579 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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