Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G099800.1 |
Family | GH35 |
Protein Properties | Length: 842 Molecular Weight: 93815.7 Isoelectric Point: 6.5858 |
Chromosome | Chromosome/Scaffold: 07 Start: 12562846 End: 12573962 |
Description | beta-galactosidase 10 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 28 | 332 | 0 |
LIINGERKLLISAAIHYPRSVPAMWPELVKTAKEGGVDVIETYVFWNVHQPTSPSEYHFDGRFDLVKFINIVQEAGMYLILRIGPFVAAEWNFGGIPVWL HYVNGTVFRTDNYNFKYYMEEFTTYIVKLMKKEKLFASQGGPIILSQVENEYGYYEGAYGEGGKRYAAWAAQMAVSQNTGVPWIMCQQFDAPPSVINTCN SFYCDQFKPIFPDKPKIWTENWPGWFQTFGAPNPHRPAEDVAFSVARFFQKGGSVQNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRLPKWGHL KELHK |
Full Sequence |
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Protein Sequence Length: 842 Download |
MALGLIFLFS LCFTLCFAGN VSYDSRSLII NGERKLLISA AIHYPRSVPA MWPELVKTAK 60 EGGVDVIETY VFWNVHQPTS PSEYHFDGRF DLVKFINIVQ EAGMYLILRI GPFVAAEWNF 120 GGIPVWLHYV NGTVFRTDNY NFKYYMEEFT TYIVKLMKKE KLFASQGGPI ILSQVENEYG 180 YYEGAYGEGG KRYAAWAAQM AVSQNTGVPW IMCQQFDAPP SVINTCNSFY CDQFKPIFPD 240 KPKIWTENWP GWFQTFGAPN PHRPAEDVAF SVARFFQKGG SVQNYYMYHG GTNFGRTAGG 300 PFITTSYDYE APIDEYGLPR LPKWGHLKEL HKAIKLCEHV LLNSKPVNLS LGPSQEADVY 360 ADASGGCVAF LANIDDKNDK TVDFQNVSFK LPAWSVSILP DCKNVVYNTA KVTSQTALVE 420 MVPDNLQQKD GSKALKWEVF VEKAGIWGEP DFMKNGFVDH INTTKDTTDY LWYTTSIVVG 480 ENEEFLKEGR HPVLLIESMG HALHAFVNQE LQGSASGNGS HSPFKFKNPI SLKAGNNEIA 540 LLSMTVGLPN AGSFYEWVGA GLTSVRIEGF NNGTVDLSHF NWIYKIGLQG EKLGIYKPEG 600 VNSVSWVATS EPPKKQPLTW YKVVLDPPAG NEPVGLDMLH MGKGLAWLNG EEIGRYWPRK 660 SSVHEKCVTE CDYRGKFMPD KCFTGCGQPT QRWYHVPRSW FKPSGNLLVI FEEKGGDPEK 720 ITFSRRKMSS ICALIAEDYP SADRKSLQEA GSKNSNSKAS VHLGCPQNAV ISAVKFASFG 780 TPTGKCGSYS EGECHDPNSI SVVEKACLNK TECTIELTEE NFNKGLCPDF TRRLAVEAVC 840 S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02140 | Gal_Lectin | 3.0e-16 | 763 | 840 | 82 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 2.0e-19 | 21 | 324 | 364 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 4.0e-148 | 27 | 334 | 323 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 3 | 841 | 842 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF70823.1 | 0 | 20 | 841 | 45 | 870 | AF154422_1 beta-galactosidase [Solanum lycopersicum] |
DDBJ | BAD91080.1 | 0 | 20 | 841 | 28 | 851 | beta-D-galactosidase [Pyrus pyrifolia] |
EMBL | CBI21600.1 | 0 | 14 | 841 | 16 | 847 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002310540.1 | 0 | 1 | 841 | 1 | 827 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522927.1 | 0 | 14 | 841 | 22 | 803 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 5.99756e-43 | 19 | 317 | 6 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 4e8d_B | 6e-35 | 30 | 319 | 12 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 4e8d_A | 6e-35 | 30 | 319 | 12 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |