Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a005106m |
Family | GH28 |
Protein Properties | Length: 498 Molecular Weight: 53191.3 Isoelectric Point: 8.635 |
Chromosome | Chromosome/Scaffold: 66 Start: 679324 End: 683652 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 354 | 454 | 3.2e-28 |
MHNTMNGVRIKTWQGGSGSVQGVLFSNIQVNEVQLPIVIDQFYCDRSSCKNQTAAVALSGINYESIRGTYTVKPVHLACSDNMPCTDVTLTNIQLKPQQE R | |||
GH28 | 145 | 343 | 1.49939e-43 |
AAACKIEASTINVPADYVFLVGPISFSGPYCQHNIVFQLDGVITAPTSPSHWGSGLLQWLEFTKLVGLTIRGSGTIDGNGAVWWQNSPYDHDPLDDQSKL IFPSNGSLSQKPPIPVRSSLGGKMPSIKPTALRFYGSYNVTVTGITIQNSPQCHLKFDNCIGVSVYNFSVSSPGDSPNTDGIHLQNSKDVLIRSSTLAC |
Full Sequence |
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Protein Sequence Length: 498 Download |
MGGSYFRNLT FMVIVAVLLL GFSHIETGNA KRIGRHWRQS RNAADSLSKK KGKSHHSSNA 60 GKSKHKTPSP KPPPPPTPAP VVVSAPPALP PATGPKGSPP PPTAPPTDKG GGYSPVGSTV 120 LNVLNFGAKG DGISDDTKAF QAAWAAACKI EASTINVPAD YVFLVGPISF SGPYCQHNIV 180 FQLDGVITAP TSPSHWGSGL LQWLEFTKLV GLTIRGSGTI DGNGAVWWQN SPYDHDPLDD 240 QSKLIFPSNG SLSQKPPIPV RSSLGGKMPS IKPTALRFYG SYNVTVTGIT IQNSPQCHLK 300 FDNCIGVSVY NFSVSSPGDS PNTDGIHLQN SKDVLIRSST LACEGANQIT LDEMHNTMNG 360 VRIKTWQGGS GSVQGVLFSN IQVNEVQLPI VIDQFYCDRS SCKNQTAAVA LSGINYESIR 420 GTYTVKPVHL ACSDNMPCTD VTLTNIQLKP QQERYHMYDP YCWQTFGQLN SPTIPPVGCL 480 MVGKPSSNKI QGDSDSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-46 | 116 | 448 | 378 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-50 | 117 | 449 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-52 | 119 | 449 | 376 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-56 | 150 | 448 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-74 | 115 | 476 | 406 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 497 | 4 | 516 | unknown [Populus trichocarpa] |
EMBL | CAN65317.1 | 0 | 152 | 497 | 4 | 388 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266600.1 | 0 | 1 | 497 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 497 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 497 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.000000000006 | 121 | 336 | 28 | 251 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.000000000006 | 121 | 336 | 28 | 251 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.000000000006 | 121 | 336 | 28 | 251 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.000000000006 | 121 | 336 | 28 | 251 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000004 | 137 | 396 | 26 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |