Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29912.m005426 |
Family | CE8 |
Protein Properties | Length: 383 Molecular Weight: 42467.8 Isoelectric Point: 9.6015 |
Chromosome | Chromosome/Scaffold: 29912 Start: 961422 End: 964573 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 86 | 377 | 0 |
TVDKNPAYGDFTSIQDAIDSLPFINLVRVVIRVHAGVYKEKVSIPPLKSFITVEGAGADKTIIQWGDTAQTPGAKGQPMGTYNSATFAVNSPYFIAKNIT FKNTTPVPPPGAIGKQAVAFRISADTAVFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQYTGALTAQGRSSILDDTGFS FVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPTREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFISLSFIDG |
Full Sequence |
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Protein Sequence Length: 383 Download |
MSKSHCIISI FILLVFLLDS SQTAVGHTKG IRPRKKHPWK NLPTINQTRV EFSEMQFMKW 60 VKFVGKLKHS VFKTAKNKLF PSYTLTVDKN PAYGDFTSIQ DAIDSLPFIN LVRVVIRVHA 120 GVYKEKVSIP PLKSFITVEG AGADKTIIQW GDTAQTPGAK GQPMGTYNSA TFAVNSPYFI 180 AKNITFKNTT PVPPPGAIGK QAVAFRISAD TAVFLGCKFL GAQDTLYDHL GRHYYKDCYI 240 EGSVDFIFGN GLSLFEGCHV HAIAQYTGAL TAQGRSSILD DTGFSFVNCK VTGSGALYLG 300 RAWGPFSRVV FAYTYMDNII IPKGWYNWGD PTREMTVFYG QYKCTGPGAS FAGRVSWSRE 360 LTDEEAKPFI SLSFIDGSEW IKI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 2.0e-115 | 84 | 382 | 307 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-115 | 74 | 382 | 309 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-118 | 84 | 381 | 300 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 3.0e-119 | 85 | 381 | 298 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 0 | 39 | 383 | 345 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 1 | 383 | 1 | 379 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 71 | 383 | 1 | 313 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 20 | 383 | 23 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 8 | 383 | 9 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 1 | 383 | 1 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 94 | 382 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.96182e-44 | 94 | 382 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 9e-28 | 83 | 369 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 2e-20 | 82 | 369 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 2e-20 | 82 | 369 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |